Computational Optimal Transport with Applications to Data Sciences

• AtlasOT - The Fused Unbalanced Gromov-Wasserstein for Multimodal Integration of Disease Atlases

  2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  0

  citations
• Dynamics of Measure-Valued Agents in the Space of Probabilities

  2025 SIAM Journal on Mathematical Analysis article Mathematics Geometric Analysis and Curvature Flows

  1

  citations
• PILOT-GM-VAE: patient-level analysis of single-cell disease atlas with optimal transport of Gaussian mixture variational autoencoders

  2025 Briefings in Bioinformatics article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  0

  citations
• Fisher–Rao Gradient Flows of Linear Programs and State-Action Natural Policy Gradients

  2025 SIAM Journal on Optimization article Computer Science Reinforcement Learning in Robotics Open access

  2

  citations
• scACCorDiON: a clustering approach for explainable patient level cell–cell communication graph analysis

  2025 Bioinformatics article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  3

  citations
• PILOT-GM-VAE: Patient-Level Analysis of single cell Disease Atlas with Optimal Transport of Gaussian Mixture Variational Autoencoders

  2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  0

  citations
• Automated machine learning: past, present and future

  2024 Artificial Intelligence Review article Computer Science Machine Learning and Data Classification Open access

  146

  citations
• Optimal Transport Distances for Directed, Weighted Graphs: A Case Study With Cell-Cell Communication Networks

  2024 IEEE International Conference on Acoustics Speech and Signal Processing conference-paper Mathematics Geometric Analysis and Curvature Flows Open access

  1

  citations
• Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)

  2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  8

  citations
• Making Radiomics More Reproducible across Scanner and Imaging Protocol Variations: A Review of Harmonization Methods

  2021 Journal of Personalized Medicine article Medicine Radiomics and Machine Learning in Medical Imaging Open access cited by 2 patents

  213

  citations
• Influence of synthetically generated inclusions on the stress accumulation and concentration in X65 pipeline steel

  2021 IOP Conference Series Materials Science and Engineering conference-paper Materials Science Machine Learning in Materials Science Open access

  11

  citations

11 results