MOFA+: a statistical framework for comprehensive integration of multi-modal single-cell data

• NEO-STIM advances personalized neoantigen-specific adoptive T cell therapy

  2026 Nature Communications article Medicine CAR-T cell therapy research Open access

  1

  citations
• Reduced triacylglycerols and lipid droplets are associated with resilience to Alzheimer's disease

  2026 Alzheimer s & Dementia article Medicine Alzheimer's disease research and treatments Open access

  6

  citations
• PHLOWER leverages single-cell multimodal data to infer complex, multi-branching cell differentiation trajectories

  2025 Nature Methods article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  9

  citations
• Spatial Transcriptomics Reveals Injured Cells, Signature Genes, and Communication Patterns in the Cyst Microenvironment of Polycystic Kidney Disease

  2025 Journal of the American Society of Nephrology article Biochemistry, Genetics and Molecular Biology Genetic and Kidney Cyst Diseases Open access

  1

  citations
• Reduced triacylglycerols and lipid droplets are associated with resilience to Alzheimer’s disease

  2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Alzheimer's disease research and treatments Open access

  0

  citations
• Systems analysis unravels a common rural-urban gradient in immunological profile, function, and metabolic dependencies

  2025 Science Advances article Immunology and Microbiology Immune responses and vaccinations Open access

  7

  citations
• Imputation of missing values in multi-view data

  2024 Information Fusion article Mathematics Statistical Methods and Bayesian Inference Open access cited by 1 patent

  17

  citations
• Antiviral responses induced by Tdap-IPV vaccination are associated with persistent humoral immunity to Bordetella pertussis

  2024 Nature Communications article Immunology and Microbiology Bacterial Infections and Vaccines Open access

  15

  citations
• A multi-omics data analysis workflow packaged as a FAIR Digital Object

  2024 GigaScience article Decision Sciences Scientific Computing and Data Management Open access

  14

  citations
• An in-depth comparison of linear and non-linear joint embedding methods for bulk and single-cell multi-omics

  2023 Briefings in Bioinformatics article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access

  12

  citations
• A Multi-omics Data Analysis Workflow Packaged as a FAIR Digital Object

  2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Decision Sciences Scientific Computing and Data Management Open access

  1

  citations
• An in-depth comparison of linear and non-linear joint embedding methods for bulk and single-cell multi-omics

  2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  3

  citations
• Best practices for single-cell analysis across modalities

  2023 Nature Reviews Genetics review Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access cited by 7 patents

  1,043

  citations
• scTopoGAN: unsupervised manifold alignment of single-cell data

  2023 Bioinformatics Advances article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  6

  citations
• scTopoGAN: unsupervised manifold alignment of single-cell data

  2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  1

  citations
• MOJITOO: a fast and universal method for integration of multimodal single-cell data

  2022 Bioinformatics article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  27

  citations
• How a cell decides its own fate: a single-cell view of molecular mechanisms and dynamics of cell-type specification

  2021 Biochemical Society Transactions article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  7

  citations
• Integrative Transkingdom Analysis of the Gut Microbiome in Antibiotic Perturbation and Critical Illness

  2021 mSystems article Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access

  80

  citations
• scMoC: Single-Cell Multi-omics clustering

  2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  3

  citations
• Unraveling the Complexity of the Cancer Microenvironment With Multidimensional Genomic and Cytometric Technologies

  2020 Frontiers in Oncology article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access cited by 2 patents

  60

  citations

20 results