Benchmarking algorithms for gene regulatory network inference from single-cell transcriptomic data

• Probing transcription factor subsets in gene regulatory networks

  2026 Algorithms for Molecular Biology article Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access

  0

  citations
• Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcriptomics data

  2024 Nature Computational Science article Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access

  19

  citations
• Single-cell RNA sequencing data reveals rewiring of transcriptional relationships in Alzheimer’s Disease associated with risk variants

  2023 medRxiv preprint Medicine Alzheimer's disease research and treatments Open access

  3

  citations
• Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcriptomics data

  2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access

  2

  citations
• De-novoreconstruction and identification of transcriptional gene regulatory network modules differentiating single-cell clusters

  2023 NAR Genomics and Bioinformatics article Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access

  8

  citations
• Single cell metabolism: current and future trends

  2022 Metabolomics article Biochemistry, Genetics and Molecular Biology Metabolomics and Mass Spectrometry Studies Open access

  61

  citations
• How a cell decides its own fate: a single-cell view of molecular mechanisms and dynamics of cell-type specification

  2021 Biochemical Society Transactions article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  7

  citations
• Computational Stem Cell Biology: Open Questions and Guiding Principles

  2021 Cell stem cell article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  36

  citations
• Experimental and computational technologies to dissect the kidney at the single-cell level

  2020 Nephrology Dialysis Transplantation article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  12

  citations
• The single-cell eQTLGen consortium

  2020 eLife article Biochemistry, Genetics and Molecular Biology Genetic Associations and Epidemiology Open access

  222

  citations

10 results