ChEA3: transcription factor enrichment analysis by orthogonal omics integration

• Forkhead box versus NF-κB hippocampal snRNA-seq profiles distinguish anti-Drebrin- and anti-GAD65-positive encephalitis

  2026 Journal of Neuroinflammation article Medicine Autoimmune Neurological Disorders and Treatments Open access

  0

  citations
• Endothelial cannabinoid CB1 receptor deficiency reduces shear stress-induced arterial inflammation and lipid uptake

  2026 Nature Communications article Medicine Cannabis and Cannabinoid Research Open access

  2

  citations
• Immunomodulatory endothelial cells contribute to T-cell recruitment and activation via antigen presentation on MHC II

  2026 Cardiovascular Research article Immunology and Microbiology Atherosclerosis and Cardiovascular Diseases

  1

  citations
• Constraint-based modelling of metabolic dysregulation in Gaucher disease: mitochondrial dysfunction and disrupted cholesterol homeostasis

  2026 Orphanet Journal of Rare Diseases article Medicine Lysosomal Storage Disorders Research Open access

  2

  citations
• Immunomodulatory endothelial cells contribute to T cell recruitment and activation through antigen presentation on MHC class II

  2026 dissertation Immunology and Microbiology Atherosclerosis and Cardiovascular Diseases Open access

  1

  citations
• Mechanisms of Podocyte Injury Due to Loss of the Nucleoporin NUP93

  2025 Journal of the American Society of Nephrology article Medicine Renal Diseases and Glomerulopathies Open access

  1

  citations
• Primary cell cultures from deceased harbor porpoises to study effects of polystyrene nanoplastics on gene expression

  2025 Environmental Pollution article Environmental Science Microplastics and Plastic Pollution Open access

  3

  citations
• FadA antigen of Fusobacterium nucleatum: implications for ceRNA network in colorectal cancer and adenomatous polyps progression

  2025 Discover Oncology article Biochemistry, Genetics and Molecular Biology Cancer-related molecular mechanisms research Open access

  3

  citations
• Identification of transcription factors that regulate placental sFLT1 expression

  2025 Molecular Human Reproduction article Medicine Pregnancy and preeclampsia studies Open access

  3

  citations
• How the liver transcriptome and lipid composition influence the progression of nonalcoholic fatty liver disease to hepatocellular carcinoma in a murine model

  2024 Biochimica et Biophysica Acta (BBA) - Molecular and Cell Biology of Lipids article Medicine Liver Disease Diagnosis and Treatment Open access

  2

  citations
• Exome sequencing of 20,979 individuals with epilepsy reveals shared and distinct ultra-rare genetic risk across disorder subtypes

  2024 Nature Neuroscience article Medicine Epilepsy research and treatment Open access

  68

  citations
• Endothelial cannabinoid CB1 receptor deficiency reduces arterial inflammation and lipid uptake in response to atheroprone shear stress

  2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Cannabis and Cannabinoid Research Open access

  2

  citations
• Highly dynamic inflammatory and excitability transcriptional profiles in hippocampal CA1 following status epilepticus

  2023 Scientific Reports article Medicine Epilepsy research and treatment Open access

  18

  citations
• Angiopoietin-like 4 governs diurnal lipoprotein lipase activity in brown adipose tissue

  2022 Molecular Metabolism article Medicine Adipose Tissue and Metabolism Open access cited by 2 patents

  13

  citations
• SARS-CoV-2 infection triggers profibrotic macrophage responses and lung fibrosis

  2021 Cell article Medicine COVID-19 Clinical Research Studies Open access cited by 5 patents

  523

  citations
• GRAND: a database of gene regulatory network models across human conditions

  2021 Nucleic Acids Research article Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access cited by 1 patent

  102

  citations
• Why do pathway methods work better than they should?

  2020 FEBS Letters article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access

  38

  citations
• Why do pathway methods work better than they should?

  2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access

  3

  citations
• Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data

  2020 Genome biology article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  367

  citations

19 results