The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability

• SwarmMAP: swarm learning for decentralized cell type annotation in single cell sequencing data

  2026 npj Systems Biology and Applications article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  1

  citations
• GeneSurfer enables transcriptome-wide exploration and annotation of gene co-expression modules in 3D spatial transcriptomics data

  2025 iScience article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  0

  citations
• SwarmMAP: Swarm Learning for Decentralized Cell Type Annotation in Single Cell Sequencing Data

  2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  1

  citations
• Single-cell reference mapping to construct and extend cell-type hierarchies

  2023 NAR Genomics and Bioinformatics article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  43

  citations
• A guide to the BRAIN Initiative Cell Census Network data ecosystem

  2023 PLoS Biology article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  53

  citations
• Single-cell reference mapping to construct and extend cell-type hierarchies

  2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  7

  citations
• Vision, challenges and opportunities for a Plant Cell Atlas

  2021 eLife article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  76

  citations
• Automatic Gene Function Prediction in the 2020’s

  2020 Genes article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access

  38

  citations

8 results