Bioconductor: open software development for computational biology and bioinformatics

• Delayed molecular aging, preservation of energy metabolism and enhanced exercise response in exercise-trained human muscle

  2026 Nature Aging article Medicine Exercise and Physiological Responses Open access

  2

  citations
• FAIR in practice: minimum metadata schema for bioinformatics analytics by machines

  2026 Journal of Biomedical Semantics article Computer Science Research Data Management Practices Open access

  0

  citations
• Cytotoxic T cell recognition of α-synuclein drives pathogenic immune responses in multiple system atrophy

  2026 Proceedings of the National Academy of Sciences article Medicine Parkinson's Disease Mechanisms and Treatments Open access

  1

  citations
• Multi-omics analysis in inclusion body myositis identifies mir-16 responsible for HLA overexpression

  2025 Orphanet Journal of Rare Diseases article Medicine Inflammatory Myopathies and Dermatomyositis Open access

  3

  citations
• DNA methylation and gene expression trajectories of human postprandial metabolism

  2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Epigenetics and DNA Methylation Open access

  0

  citations
• Multi-omics analysis in inclusion body myositis identifies mir-16 responsible for HLA overexpression

  2024 Research Square preprint Medicine Inflammatory Myopathies and Dermatomyositis Open access

  0

  citations
• Metabolomic biomarkers of habitual B vitamin intakes unveil novel differentially methylated positions in the human epigenome

  2023 Clinical Epigenetics article Medicine Folate and B Vitamins Research Open access

  9

  citations
• Physiological and transcriptomic changes drive robust responses in Paenarthrobacter sp. AT5 to co-exposure of sulfamethoxazole and atrazine

  2023 Journal of Hazardous Materials article Environmental Science Pharmaceutical and Antibiotic Environmental Impacts

  22

  citations
• Genome-Wide Scans and Transcriptomic Analyses Characterize Selective Changes as a Result of Chlorantraniliprole Resistance in Plutella xylostella

  2022 International Journal of Molecular Sciences article Biochemistry, Genetics and Molecular Biology Insect Resistance and Genetics Open access

  2

  citations
• Krüppel-like factor 7 influences translation and pathways involved in ribosomal biogenesis in breast cancer

  2022 Breast Cancer Research article Biochemistry, Genetics and Molecular Biology Kruppel-like factors research Open access

  17

  citations
• Temporal Transcript Profiling Identifies a Role for Unfolded Protein Stress in Human Gut Ischemia-Reperfusion Injury

  2021 Cellular and Molecular Gastroenterology and Hepatology article Biochemistry, Genetics and Molecular Biology Endoplasmic Reticulum Stress and Disease Open access

  21

  citations
• Characterization of ALTO-encoding circular RNAs expressed by Merkel cell polyomavirus and trichodysplasia spinulosa polyomavirus

  2021 PLoS Pathogens article Biochemistry, Genetics and Molecular Biology Circular RNAs in diseases Open access

  43

  citations
• Lipomatous Solitary Fibrous Tumors Harbor Rare NAB2-STAT6 Fusion Variants and Show Up-Regulation of the Gene PPARG, Encoding for a Regulator of Adipocyte Differentiation

  2021 American Journal Of Pathology article Medicine Soft tissue tumor case studies Open access

  13

  citations
• Lumenal calcification and microvasculopathy in fetuin-A-deficient mice lead to multiple organ morbidity

  2020 PLoS ONE article Medicine Parathyroid Disorders and Treatments Open access cited by 2 patents

  53

  citations
• In vitro and bioinformatics mechanistic-based approach for cadmium carcinogenicity understanding

  2020 Toxicology in Vitro article Environmental Science Heavy Metal Exposure and Toxicity Open access

  16

  citations

15 results