g:Profiler—a web-based toolset for functional profiling of gene lists from large-scale experiments

• Deep Visual Proteomics links vascular smooth muscle cell phenotypes to atherosclerotic plaque stability

  2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology Atherosclerosis and Cardiovascular Diseases Open access

  0

  citations
• The Genomics of Convergent Adaptation to Intertidal Gravel Beaches in Mediterranean Clingfishes

  2026 Genome Biology and Evolution article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access

  5

  citations
• PILOT-GM-VAE: patient-level analysis of single-cell disease atlas with optimal transport of Gaussian mixture variational autoencoders

  2025 Briefings in Bioinformatics article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  0

  citations
• PILOT-GM-VAE: Patient-Level Analysis of single cell Disease Atlas with Optimal Transport of Gaussian Mixture Variational Autoencoders

  2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  0

  citations
• Macrophage-mediated myelin recycling fuels brain cancer malignancy

  2024 Cell article Immunology and Microbiology Immune cells in cancer Open access cited by 1 patent

  219

  citations
• Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)

  2023 Molecular Systems Biology article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  36

  citations
• Recommendations for detection, validation, and evaluation of RNA editing events in cardiovascular and neurological/neurodegenerative diseases

  2023 Molecular Therapy — Nucleic Acids article Biochemistry, Genetics and Molecular Biology RNA regulation and disease Open access

  21

  citations
• Mapping the cardiac vascular niche in heart failure

  2022 Nature Communications article Medicine Cardiac Fibrosis and Remodeling Open access

  103

  citations
• The Microbiome in Bronchial Biopsies from Smokers and Ex-Smokers with Stable COPD - A Metatranscriptomic Approach

  2022 COPD Journal of Chronic Obstructive Pulmonary Disease article Medicine Chronic Obstructive Pulmonary Disease (COPD) Research Open access

  1

  citations
• Establishing a consensus for the hallmarks of cancer based on gene ontology and pathway annotations

  2021 BMC Bioinformatics article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access cited by 1 patent

  40

  citations
• Comparison of genome-wide gene expression profiling by RNA Sequencingversusmicroarray in bronchial biopsies of COPD patients before and after inhaled corticosteroid treatment: does it provide new insights?

  2021 ERJ Open Research article Medicine Chronic Obstructive Pulmonary Disease (COPD) Research Open access

  3

  citations
• Recommendations for the analysis of gene expression data to identify intrinsic differences between similar tissues

  2020 Genomics article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access

  16

  citations

12 results