Systematic evaluation of objective functions for predicting intracellular fluxes in Escherichia coli

• Sensitivities in protein allocation models reveal distribution of metabolic capacity and flux control

  2024 Bioinformatics article Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access

  5

  citations
• 2′-Fucosyllactose helps butyrate producers outgrow competitors in infant gut microbiota simulations

  2024 iScience article Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access

  7

  citations
• 2’-Fucosyllactose helps butyrate producers outgrow competitors in infant gut microbiota simulations

  2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access

  0

  citations
• Towards evolutionary predictions: Current promises and challenges

  2022 Evolutionary Applications article Biochemistry, Genetics and Molecular Biology Evolution and Genetic Dynamics Open access

  81

  citations
• A Multiscale Spatiotemporal Model Including a Switch from Aerobic to Anaerobic Metabolism Reproduces Succession in the Early Infant Gut Microbiota

  2022 mSystems article Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access

  22

  citations
• A multiscale spatiotemporal model including a switch from aerobic to anaerobic metabolism reproduces succession in the early infant gut microbiota

  2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access

  2

  citations
• Mechanistic model-driven exometabolomic characterisation of human dopaminergic neuronal metabolism

  2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access

  12

  citations
• Proteome Regulation Patterns Determine Escherichia coli Wild-Type and Mutant Phenotypes

  2021 mSystems article Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access

  25

  citations
• Analysis of the local well‐posedness of optimization‐constrained differential equations by local optimality conditions

  2020 AIChE Journal article Computer Science Optimization and Variational Analysis Open access

  3

  citations
• Simulation of differential-algebraic equation systems with optimization criteria embedded in Modelica

  2020 Computers & Chemical Engineering article Computer Science Modeling and Simulation Systems

  16

  citations
• Protein allocation and enzymatic constraints explain Escherichia coli wildtype and mutant phenotypes

  2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access

  15

  citations

11 results