Network medicine: a network-based approach to human disease

• Identification of a PRDM1-regulated T cell network to regulate atherosclerotic plaque inflammation

  2025 Genome Medicine article Immunology and Microbiology Atherosclerosis and Cardiovascular Diseases Open access

  5

  citations
• A unifying theory of aging and mortality

  2025 Scientific Reports article Social Sciences Insurance, Mortality, Demography, Risk Management Open access

  5

  citations
• Cell type heterogeneity in gene co-expression networks: implications for toxicological research

  2025 Briefings in Bioinformatics article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access

  3

  citations
• A network-based transcriptomic landscape of HepG2 cells uncovering causal gene-cytotoxicity interactions underlying drug-induced liver injury

  2023 Toxicological Sciences article Pharmacology, Toxicology and Pharmaceutics Drug-Induced Hepatotoxicity and Protection Open access

  13

  citations
• Exploring pathway interactions to detect molecular mechanisms of disease: 22q11.2 deletion syndrome

  2023 Orphanet Journal of Rare Diseases article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access

  2

  citations
• Toxicogenomics Approaches to Address Toxicity and Carcinogenicity in the Liver

  2023 Toxicologic Pathology article Biochemistry, Genetics and Molecular Biology Carcinogens and Genotoxicity Assessment Open access

  8

  citations
• Female Gene Networks Are Expressed in Myofibroblast-Like Smooth Muscle Cells in Vulnerable Atherosclerotic Plaques

  2023 Arteriosclerosis Thrombosis and Vascular Biology article Immunology and Microbiology Atherosclerosis and Cardiovascular Diseases Open access

  37

  citations
• Dynamic effects of probiotic formula ecologic®825 on human small intestinal ileostoma microbiota: a network theory approach

  2023 Gut Microbes article Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access

  10

  citations
• Edge and modular significance assessment in individual-specific networks

  2023 Scientific Reports article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access cited by 1 patent

  3

  citations
• Identifying multiscale translational safety biomarkers using a network-based systems approach

  2023 iScience article Pharmacology, Toxicology and Pharmaceutics Drug-Induced Hepatotoxicity and Protection Open access

  14

  citations
• Probiotics supplementation to adult human small intestinal stoma microbiota causes dynamic increase in the community resistance to perturbations and nutrient utilization

  2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access

  0

  citations
• A Network-based Transcriptomic Landscape of HepG2 cells to Uncover Causal Gene Cytotoxicity Interactions Underlying Drug-Induced Liver Injury

  2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Pharmacology, Toxicology and Pharmaceutics Drug-Induced Hepatotoxicity and Protection Open access

  1

  citations
• Exploring Pathway Interactions to Detect Molecular Mechanisms of Disease: 22q11.2 Deletion Syndrome

  2022 Research Square preprint Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access

  1

  citations
• NetImmerse - Evaluating User Experience in Immersive Network Exploration

  2022 Lecture notes in computer science conference-paper Computer Science Data Visualization and Analytics

  1

  citations
• “Omics” in traumatic brain injury: novel approaches to a complex disease

  2021 Acta Neurochirurgica article Medicine Traumatic Brain Injury and Neurovascular Disturbances Open access

  17

  citations
• Community Detection in Large-Scale Bipartite Biological Networks

  2021 Frontiers in Genetics article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access

  26

  citations
• The eTRANSAFE Project on Translational Safety Assessment through Integrative Knowledge Management: Achievements and Perspectives

  2021 Pharmaceuticals article Pharmacology, Toxicology and Pharmaceutics Pharmacovigilance and Adverse Drug Reactions Open access

  34

  citations
• Statistical Physics for Medical Diagnostics: Learning, Inference, and Optimization Algorithms

  2020 Diagnostics article Health Professions Artificial Intelligence in Healthcare Open access

  6

  citations
• A strategy to incorporate prior knowledge into correlation network cutoff selection

  2020 Nature Communications article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access

  29

  citations

19 results