Smart-seq2 for sensitive full-length transcriptome profiling in single cells

• T-cell receptor repertoires against HLA class I-restricted minor histocompatibility antigens are highly diverse with a small subset of public clonotypes

  2026 Journal for ImmunoTherapy of Cancer article Medicine Hematopoietic Stem Cell Transplantation Open access

  0

  citations
• Single-cell integration and multi-modal profiling reveals phenotypes and spatial organization of neutrophils in colorectal cancer

  2026 Cancer Cell article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  33

  citations
• Transcriptomic profiling of Polycystic Kidney Disease identifies paracrine factors in the early cyst microenvironment

  2023 Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease article Biochemistry, Genetics and Molecular Biology Genetic and Kidney Cyst Diseases Open access

  7

  citations
• Spatial transcriptomics reveal markers of histopathological changes in Duchenne muscular dystrophy mouse models

  2023 Nature Communications article Biochemistry, Genetics and Molecular Biology Muscle Physiology and Disorders Open access

  55

  citations
• PD-L1 checkpoint blockade promotes regulatory T cell activity that underlies therapy resistance

  2023 Science Immunology article Medicine Cancer Immunotherapy and Biomarkers Open access

  104

  citations
• Pathways linking aging and atheroprotection in Mif ‐deficient atherosclerotic mice

  2023 The FASEB Journal article Immunology and Microbiology Macrophage Migration Inhibitory Factor Open access

  23

  citations
• SARS-CoV-2-specific CD4+ and CD8+ T cell responses can originate from cross-reactive CMV-specific T cells

  2022 eLife article Medicine SARS-CoV-2 and COVID-19 Research Open access

  40

  citations
• SARS-CoV-2-specific CD4 + and CD8 + T cell responses can originate from cross-reactive CMV-specific T cells

  2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine SARS-CoV-2 and COVID-19 Research Open access

  1

  citations
• Community-driven ELIXIR activities in single-cell omics

  2022 F1000Research article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  11

  citations
• Benchmarking computational methods for B-cell receptor reconstruction from single-cell RNA-seq data

  2022 NAR Genomics and Bioinformatics article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  14

  citations
• Benchmarking computational methods for B-cell receptor reconstruction from single-cell RNA-seq data

  2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  4

  citations
• Spatial transcriptomics reveal markers of histopathological changes in Duchenne muscular dystrophy mouse models

  2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Muscle Physiology and Disorders Open access

  5

  citations
• Prolonged activation of nasal immune cell populations and development of tissue-resident SARS-CoV-2-specific CD8+ T cell responses following COVID-19

  2021 Nature Immunology article Medicine SARS-CoV-2 and COVID-19 Research Open access cited by 4 patents

  129

  citations
• How a cell decides its own fate: a single-cell view of molecular mechanisms and dynamics of cell-type specification

  2021 Biochemical Society Transactions article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  7

  citations
• Propionate attenuates atherosclerosis by immune-dependent regulation of intestinal cholesterol metabolism

  2021 European Heart Journal article Medicine Cholesterol and Lipid Metabolism Open access cited by 4 patents

  372

  citations
• Prolonged activation of nasal immune cell populations and development of tissue-resident SARS-CoV-2 specific CD8 T cell responses following COVID-19

  2021 medRxiv preprint Medicine SARS-CoV-2 and COVID-19 Research Open access cited by 4 patents

  15

  citations
• Faculty Opinions recommendation of Engram-specific transcriptome profiling of contextual memory consolidation.

  2021 Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature peer-review Neuroscience Memory and Neural Mechanisms Open access

  0

  citations
• NS-Forest: A machine learning method for the objective identification of minimum marker gene combinations for cell type determination from single cell RNA sequencing

  2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  12

  citations
• Single-Cell RNA Sequencing Reveals mRNA Splice Isoform Switching during Kidney Development

  2020 Journal of the American Society of Nephrology article Biochemistry, Genetics and Molecular Biology RNA Research and Splicing Open access

  24

  citations

19 results