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Biomedical Text Mining and Ontologies Sign in to save
Papers per year
Papers 207
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From Large Language Models to Knowledge Graphs for Biomarker Discovery in Cancer2023 arXiv (Cornell University) preprint Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Md. Rezaul Karim, Lina Molinas Comet, Md Shajalal, Oya Beyan, Dietrich Rebholz‐Schuhmann, Stefan Decker
3citations -
Semantic Annotation of Experimental Methods in Analytical Chemistry2022 Analytical Chemistry article Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Magnus Palmblad, Enahoro Asein, Nina P. Bergman, A. P. Ivanova, Lukas Ramasauskas, Hazzar Mohammed Reyes, +3 more
3citations -
Evaluation of SURUS: a named entity recognition NLP system to extract knowledge from interventional study records2025 BMC Medical Research Methodology article Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Casper Peeters, Koen Vijverberg, Marianne G. Pouwer, Bart A. Westerman, Maikel Boot, Suzan Verberne
2citations -
Medical Spoken Named Entity Recognition2025 Conference of the Nations of the Americas Chapter of the Association for Computational Linguistics: Human Language Technologies (NAACL) conference-paper Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Khai Le-Duc, David Thulke, Hung-Phong Tran, Long Vo-Dang, Khai-Nguyen Nguyen, Truong Son Hy, +1 more
1citations -
CMEO: a metadata-centric ontology for clinical studies exploration and harmonization assessment2025 BMC Medical Informatics and Decision Making article Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Komal Gilani, Marlo Verket, Hans‐Peter Brunner‐La Rocca, Enrico Nicolis, Katharina Marx-Schütt, Visara Urovi, +1 more
1citations -
biopragmatics/pyobo: v0.12.132026 Zenodo (CERN European Organization for Nuclear Research) software Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Charles Tapley Hoyt, Benjamin M. Gyori, Chris J Mungall, Daniel Domingo-Fernández, jplfaria, Tenzin Nanglo, +3 more
1citations -
Large-Language Models for data extraction from written kidney biopsy reports2026 medRxiv preprint Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Leon Niggemeier, David Laurin Hölscher, Tim CJ Herkens, Philine Gilles, Peter Böör, Roman David Bülow
1citations -
Biomedical Entity Linking for Dutch: Fine-tuning a Self-alignment BERT Model on an Automatically Generated Wikipedia Corpus2024 Language Resources and Evaluation Conference (LREC) conference-paper Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Fons Hartendorp, Tom M Seinen, Erik M. van Mulligen, Suzan Verberne
1citations -
INSIGHTBUDDY-AI: Medication Extraction and Entity Linking using Pre-Trained Language Models and Ensemble Learning1citations
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The use of Foundational Ontologies in Bioinformatics2022 Research Square preprint Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
César H. Bernabé, Núria Queralt-Rosiñach, Vítor E. Silva Souza, Luiz Olavo Bonino da Silva Santos, Barend Mons, Annika Jacobsen, +1 more
1citations -
Evaluation of SURUS: a Named Entity Recognition System to Extract Knowledge from Interventional Study Records2024 medRxiv preprint Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Casper Peeters, Koen Vijverberg, Marianne G. Pouwer, Bart A. Westerman, Maikel Boot, Suzan Verberne
1citations -
A Biomedical Knowledge Graph for Biomarker Discovery in Cancer2023 arXiv (Cornell University) preprint Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Md. Rezaul Karim, Lina Molinas Comet, Oya Beyan, Dietrich Rebholz‐Schuhmann, Stefan Decker
0citations
Most active Aachen authors
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Charles Tapley Hoyt 2 citations overall134 papers
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Núria Queralt-Rosiñach 5,889 citations overall17 papers
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Marco Roos 23,445 citations overall14 papers
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César H. Bernabé 257 citations overall11 papers
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Martin Larralde 0 citations overall11 papers
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Annika Jacobsen 1,388 citations overall9 papers
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Barend Mons 24,435 citations overall7 papers
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Suzan Verberne 2,854 citations overall7 papers
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Marlo Verket 262 citations overall7 papers
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Stefan Decker 17,307 citations overall5 papers
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Rajaram Kaliyaperumal 2,864 citations overall5 papers
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Katharina Marx-Schütt 48 citations overall5 papers
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Sulayman K. Sowe 989 citations overall3 papers
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Yongli Mou 307 citations overall3 papers
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Lifeng Han 285 citations overall3 papers