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Helixer: cross-species gene annotation of large eukaryotic genomes using deep learning2020 Bioinformatics article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access cited by 1 patent
Felix Stiehler, Marvin Steinborn, Daniela Dey, Andreas P.M. Weber, Alisandra K. Denton
179citations -
CrossTalkeR: analysis and visualization of ligand–receptorne tworks2021 Bioinformatics article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
James Shiniti Nagai, Nils B. Leimkühler, Michael T. Schaub, Rebekka K. Schneider, Ivan G. Costa
63citations -
Converting networks to predictive logic models from perturbation signalling data with CellNOpt2020 Bioinformatics article Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access
Enio Gjerga, Panuwat Trairatphisan, Attila Gábor, Hermann Koch, Franceco Ceccarelli, Aurélien J. F. Dugourd, +2 more
37citations -
The Minimum Information about a Molecular Interaction CAusal STatement (MI2CAST)2020 Bioinformatics article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Vasundra Touré, Steven Vercruysse, Márcio Luís Acencio, Ruth C. Lovering, Sandra E. Orchard, Glyn Bradley, +20 more
23citations -
SECEDO: SNV-based subclone detection using ultra-low coverage single-cell DNA sequencing2022 Bioinformatics article Biochemistry, Genetics and Molecular Biology Cancer Genomics and Diagnostics Open access cited by 1 patent
Hana Rozhoňová, Daniel Danciu, Stefan G. Stark, Gunnar Rätsch, André Kahles, Kjong-Van Lehmann
9citations -
13CFLUX - third-generation high-performance engine for isotopically (non)stationary 13C metabolic flux analysis2025 Bioinformatics article Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Anton Stratmann, Martin Beyß, Johann F. Jadebeck, Wolfgang Wiechert, Katharina Nöh
5citations -
BeadNet: deep learning-based bead detection and counting in low-resolution microscopy images2020 Bioinformatics article Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access
Tim Scherr, Karolin Streule, Andreas Bartschat, Moritz Böhland, Johannes Stegmaier, Markus Reischl, +2 more
5citations -
scACCorDiON: a clustering approach for explainable patient level cell–cell communication graph analysis2025 Bioinformatics article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
James Shiniti Nagai, Tiago Maié, Michael T. Schaub, Ivan G. Costa
3citations -
Prediction of gene expression using histone modification patterns extracted by Particle Swarm Optimization2025 Bioinformatics article Biochemistry, Genetics and Molecular Biology Genomics and Chromatin Dynamics Open access
Niels Benjamin Paul, Jonas Chanrithy Wolber, Malte Sahrhage, Tim Beißbarth, Martin Haubrock
1citations -
Trans-dimensional Bayesian model averaging for 13C-metabolic flux analysis: evidence-based flux inference under structural model uncertainty2026 Bioinformatics article Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Johann F. Jadebeck, Anton Stratmann, Martin Beyß, Katharina Nöh
0citations
18 results