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Benchmarking variational AutoEncoders on cancer transcriptomics data2023 PLoS ONE article Biochemistry, Genetics and Molecular Biology Gene expression and cancer classification Open access
Mostafa Eltager, Tamim Abdelaal, Mohammed Charrout, Ahmed Essam Mahfouz, Marcel J. T. Reinders, Stavros Makrodimitris
18citations -
PILOT-GM-VAE: patient-level analysis of single-cell disease atlas with optimal transport of Gaussian mixture variational autoencoders2025 Briefings in Bioinformatics article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Mehdi Joodaki, Mina Shaigan, James Shiniti Nagai, Tiago Maié, Christoph Kuppe, Ivan G. Costa
0citations -
Prediction of the microstructure of cold-compacted Astaloy 85Mo with deep generative models2024 Computational Materials Science article Engineering Powder Metallurgy Techniques and Materials Open access
Oliver Schenk, Marco Becker, Yuanbin Deng, Philipp Niemietz, Thomas Bergs, Christoph Broeckmann
6citations -
VAE-MOTION: A deep generative model for cardiomyocyte contractility analysis for improving drug efficacy evaluation2025 Expert Systems with Applications article Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access
Giorgia Curci, Paola Casti, Luca Sala, Marcella Brescia, Pasquale Cascarano, Michele D’Orazio, +6 more
1citations -
Discovery of drug–omics associations in type 2 diabetes with generative deep-learning models2023 Nature Biotechnology article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Rosa Lundbye Allesøe, Agnete Troen Lundgaard, Ricardo Hernández Medina, Alejandro Aguayo‐Orozco, Joachim Johansen, Jakob Nybo Nissen, +94 more
112citations -
CaloChallenge 2022: a community challenge for fast calorimeter simulation2025 Reports on Progress in Physics article Physics and Astronomy Particle physics theoretical and experimental studies Open access
Claudius Krause, M. Faucci Giannelli, Gregor Kasieczka, Benjamin Philip Nachman, Dalila Salamani, David Shih, +60 more
11citations -
PATH: A discrete-sequence dataset for evaluating online unsupervised anomaly detection approaches for multivariate time series2025 Big Data Research article Computer Science Anomaly Detection Techniques and Applications Open access
Lucas Correia, Jan-Christoph Goos, Thomas Bäck, Anna V. Kononova
1citations -
QUEST: Quasar unsupervised encoder and synthesis tool2026 Archive ouverte UNIGE (University of Geneva) article Physics and Astronomy Galaxies: Formation, Evolution, Phenomena Open access
Francesco Guarneri, Jan–Torge Schindler, Romain Meyer, D. Yang, Joseph F. Hennawi, Luisa Lucie-Smith, +2 more
0citations -
QUEST: Quasar unsupervised encoder and synthesis tool2026 Springer Link (Chiba Institute of Technology) article Physics and Astronomy Galaxies: Formation, Evolution, Phenomena Open access
Francesco Guarneri, Jan–Torge Schindler, R. A. Meyer, D. Yang, Joseph F. Hennawi, Luisa Lucie-Smith, +2 more
0citations