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PILOT-GM-VAE: patient-level analysis of single-cell disease atlas with optimal transport of Gaussian mixture variational autoencoders2025 Briefings in Bioinformatics article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Mehdi Joodaki, Mina Shaigan, James Shiniti Nagai, Tiago Maié, Christoph Kuppe, Ivan G. Costa
0citations -
Benchmarking variational AutoEncoders on cancer transcriptomics data2023 PLoS ONE article Biochemistry, Genetics and Molecular Biology Gene expression and cancer classification Open access
Mostafa Eltager, Tamim Abdelaal, Mohammed Charrout, Ahmed Essam Mahfouz, Marcel J. T. Reinders, Stavros Makrodimitris
18citations -
VAE-MOTION: A deep generative model for cardiomyocyte contractility analysis for improving drug efficacy evaluation2025 Expert Systems with Applications article Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access
Giorgia Curci, Paola Casti, Luca Sala, Marcella Brescia, Pasquale Cascarano, Michele D’Orazio, +6 more
1citations -
PyTEA-O: a Python implementation of Two-Entropies Analysis for protein sequence variation analysis2026 Bioinformatics article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Rosan C.M. Kuin, Alexander Thomas Julian, J Chander, S Lee, Gerard J. P. van Westen
1citations -
Partitioning variability in animal behavioral videos using semi-supervised variational autoencoders2021 PLoS Computational Biology article Computer Science Human Pose and Action Recognition Open access
Matthew R Whiteway, Dan Biderman, Yoni Friedman, Mario Dipoppa, E. Kelly Buchanan, Anqi Wu, +11 more
34citations -
Isogeometric analysis of 3D solids in boundary representation for problems in nonlinear solid mechanics and structural dynamics2021 International Journal for Numerical Methods in Engineering article Engineering Advanced Numerical Analysis Techniques Open access
Margarita Chasapi, Leonie Mester, Bernd Simeon, Sven Klinkel
39citations -
Automated image analysis system for studying cardiotoxicity in human pluripotent stem cell-Derived cardiomyocytes2020 BMC Bioinformatics article Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access
Lu Cao, Andries D. van der Meer, Fons J. Verbeek, Robert C. J. J. Passier
14citations -
Lithium plating in commercial lithium-ion cells: An extensive study combining electrical methods with post-mortem analysis2025 Journal of Energy Storage article Engineering Advanced Battery Technologies Research Open access
Heinrich Ditler, Thorsten Tegetmeyer-Kleine, Gereon Karsten Stahl, Christiane Rahe, Dirk Uwe Sauer
15citations -
Enhancing Variant Prioritization in VarFish through On-Premise Computational Facial Analysis2024 Genes article Biochemistry, Genetics and Molecular Biology Genomics and Rare Diseases Open access
Meghna Ahuja Bhasin, Alexej Knaus, Pietro Incardona, Alexander Schmid, Manuel Holtgrewe, Miriam Elbracht, +2 more
3citations