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Transcriptome-Wide Prediction and Measurement of Combined Effects Induced by Chemical Mixture Exposure in Zebrafish Embryos2021 Environmental Health Perspectives article Environmental Science Environmental Toxicology and Ecotoxicology Open access
Andreas Schüttler, Gianina Jakobs, J.M. Fix, Martin Krayer Von Krauss, Janet Krüger, David Leuthold, +2 more
8citations -
Eye-Transcriptome and Genome-Wide Sequencing for Scolecophidia: Implications for Inferring the Visual System of the Ancestral Snake2021 Genome Biology and Evolution article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
David J. Gower, James F. Fleming, Davide Pisani, Freek J. Vonk, Harald M. I. Kerkkamp, Leo Peichl, +6 more
27citations -
Elucidating mechano-pathology of osteoarthritis: transcriptome-wide differences in mechanically stressed aged human cartilage explants2021 Arthritis Research & Therapy article Medicine Osteoarthritis Treatment and Mechanisms Open access
Evelyn Houtman, Margo Tuerlings, Janne Riechelman, H. Eka D. Suchiman, Robert J. P. van der Wal, Rob G. H. H. Nelissen, +4 more
33citations -
Transcriptome-Based Identification and Functional Characterization of NAC Transcription Factors Responsive to Drought Stress in Capsicum annuum L.2021 Frontiers in Genetics article Agricultural and Biological Sciences Plant Stress Responses and Tolerance Open access
Dionís Borràs, Lorenzo Barchi, Karina Schulz, Andrea Moglia, Alberto Acquadro, Iman Kamranfar, +2 more
24citations -
Sex-dependent gene regulation of human atherosclerotic plaques by DNA methylation and transcriptome integration points to smooth muscle cell involvement in women2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Epigenetics and DNA Methylation Open access
Robin J. G. Hartman, Marten A. Siemelink, Saskia Haitjema, Koen F. Dekkers, Lotte Slenders, Arjan Boltjes, +8 more
3citations -
Peripheral blood transcriptome profiling enables monitoring disease progression in dystrophic mice and patients2021 EMBO Molecular Medicine article Biochemistry, Genetics and Molecular Biology Muscle Physiology and Disorders Open access
Mirko Signorelli, Mitra Ebrahimpoor, Olga Veth, Kristina Maria Hettne, Nisha E. Verwey, Raquel García‐Rodríguez, +9 more
23citations -
A Combined mRNA- and miRNA-Sequencing Approach Reveals miRNAs as Potential Regulators of the Small Intestinal Transcriptome in Celiac Disease2021 International Journal of Molecular Sciences article Medicine Celiac Disease Research and Management Open access
Ineke L. Tan, Donatella Barisani, Roberto Panceri, Rutger Modderman, Marijn Caroline Visschedijk, Rinse Karel Weersma, +4 more
16citations -
Combi-Seq: Multiplexed transcriptome-based profiling of drug combinations using deterministic barcoding in single-cell droplets2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Lukas Mathur, Bence Szalai, Ramesh Utharala, Martine Ballinger, Jonathan J. M. Landry, Michaël Ryckelynck, +3 more
4citations -
Systematic transcriptome-based comparison of cellular adaptive stress response activation networks in hepatic stem cell-derived progeny and primary human hepatocytes2021 Toxicology in Vitro article Pharmacology, Toxicology and Pharmaceutics Drug-Induced Hepatotoxicity and Protection Open access
Bas ter Braak, Marije Niemeijer, Ruben Boon, Celine Parmentier, Audrey Baze, Lysiane Richert, +4 more
14citations -
Input data of manuscript "CACTUS: integrating clonal architecture with genomic clustering and transcriptome profiling of single tumor cells"2021 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Shadi Darvish Shafighi, Szymon M. Kiełbasa, Cornelis A.M. van Bergen, Ewa Szczurek
1citations -
Transcriptome analysis of conditionally immortalized atrial myocytes: identification of a novel atrium-enriched protein involved in sarcomere assembly and maintenance2021 European Heart Journal article Biochemistry, Genetics and Molecular Biology Congenital heart defects research Open access
Pim R.R. van Gorp, Juan Zhang, J Liu, Roula Tsonaka, Hailiang Mei, S O Dekker, +6 more
0citations -
Input data of manuscript "CACTUS: integrating clonal architecture with genomic clustering and transcriptome profiling of single tumor cells"2021 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Shadi Darvish Shafighi, Szymon M. Kiełbasa, Cornelis A.M. van Bergen, Ewa Szczurek
0citations -
The role of melanocytes in the human choroidal microenvironment and inflammation: Insights from the transcriptome2021 Pigment Cell & Melanoma Research article Biochemistry, Genetics and Molecular Biology melanin and skin pigmentation
Adrian V. Cioanca, Chieh‐Lin Wu, Riccardo Natoli, Robert Max Conway, Peter McCluskey, Martine Johanna Jager, +3 more
27citations -
Sex-dependent gene regulation of human atherosclerotic plaques by DNA methylation and transcriptome integration points to smooth muscle cell involvement in women.2021 Atherosclerosis article Immunology and Microbiology Atherosclerosis and Cardiovascular Diseases Open access
Robin J. G. Hartman, Marten A. Siemelink, Saskia Haitjema, Koen F. Dekkers, Lotte Slenders, Arjan Boltjes, +8 more
10citations -
The Transcriptome in Transition: Global Gene Expression Profiles of Young Adult Fruit Flies Depend More Strongly on Developmental Than Adult Diet5citations
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TRANSCRIPTOME DYNAMICS IN BRONCHIAL EPITHELIAL CELLS FOLLOWING TO CIGARETTE EXPOSURE2021 University of Groningen research database (University of Groningen / Centre for Information Technology) article Medicine Smoking Behavior and Cessation
Rashad Mohammad Mahbub, Anne M. van der Does, Dennis K. Ninaber, Senani N. H. Rathnayake, Corry‐Anke Brandsma, Maarten van den Berge, +4 more
0citations -
Correction to: Transcriptome signature of miRNA-26b KO mouse model suggests novel targets2021 BMC Genomic Data erratum Biochemistry, Genetics and Molecular Biology MicroRNA in disease regulation Open access
Emiel P. C. van der Vorst, Mario A. A. Pepe, Linsey J. F. Peters, Markus Haberbosch, Yvonne J. F. M. Jansen, Ronald Naumann, +3 more
0citations -
Transcriptome Data to Substantiate the Assessment of Similar Mechanism of Actions in a Read-Across Context -a Case Study on Volatile Diketones2021 Toxicology Letters article Biochemistry, Genetics and Molecular Biology Carcinogens and Genotoxicity Assessment
C Stenger Drake, W. Zobl, Harry Vrieling, Jan Boei, Thomas van Overeem Hansen, Sylvia E. Escher
0citations -
Transcriptome signature of miRNA-26b KO mouse model suggests novel targets2021 BMC Genomic Data article Biochemistry, Genetics and Molecular Biology MicroRNA in disease regulation Open access
Emiel P. C. van der Vorst, Mario A. A. Pepe, Linsey J. F. Peters, Markus Haberbosch, Yvonne J. F. M. Jansen, Ronald Naumann, +3 more
14citations -
CACTUS: integrating clonal architecture with genomic clustering and transcriptome profiling of single tumor cells2021 Genome Medicine article Biochemistry, Genetics and Molecular Biology Cancer Genomics and Diagnostics Open access
Shadi Darvish Shafighi, Szymon M. Kiełbasa, Julieta Sepúlveda-Yáñez, Ramin Monajemi, Davy Cats, Hailiang Mei, +5 more
10citations -
A non-lethal method for studying scorpion venom gland transcriptomes, with a review of potentially suitable taxa to which it can be applied2021 PLoS ONE article Biochemistry, Genetics and Molecular Biology Venomous Animal Envenomation and Studies Open access
Freek J. Vonk, Mátyás A. Bittenbinder, Harald M. I. Kerkkamp, Dwin G.B. Grashof, John Patrick Archer, Sandra Afonso, +3 more
8citations -
A combined lifestyle intervention induces a sensitization of the blood transcriptomic response to a nutrient challenge2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Nutrition, Genetics, and Disease Open access
Thies Gehrmann, Marian Beekman, Joris Deelen, Linda Partridge, Ondine van de Rest, Leon Mei, +6 more
5citations -
Differential reprogramming of breast cancer subtypes in 3D cultures and implications for sensitivity to targeted therapy2021 Scientific Reports article Biochemistry, Genetics and Molecular Biology Breast Cancer Treatment Studies Open access
Esmee Koedoot, Liesanne Wolters, Marcel Smid, Peter Stoilov, Gerhard A. Burger, Bram Herpers, +5 more
60citations