Not finding it? Sign in to also search OpenAlex live.
-
Cell type matching across species using protein embeddings and transfer learning2023 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Kirti Biharie, Lieke Michielsen, Marcel J. T. Reinders, Ahmed Essam Mahfouz
0citations -
Cell type matching across species using protein embeddings and transfer learning2024 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Kirti Biharie, Lieke Michielsen, Marcel J. T. Reinders, Ahmed Essam Mahfouz
0citations -
iFeatureOmega: an integrative platform for engineering, visualization and analysis of features from molecular sequences, structural and ligand data sets2022 Nucleic Acids Research article Biochemistry, Genetics and Molecular Biology Machine Learning in Bioinformatics Open access
Zhen Chen, Xuhan Liu, Pei Zhao, Chen Li, Yanan Wang, Fuyi Li, +7 more
102citations -
A thorough analysis of the contribution of experimental, derived and sequence-based predicted protein-protein interactions for functional annotation of proteins2020 PLoS ONE article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Stavros Makrodimitris, Marcel J. T. Reinders, Roeland C. H. J. van Ham
4citations -
3DDPDs: describing protein dynamics for proteochemometric bioactivity prediction. A case for (mutant) G protein-coupled receptors2023 Journal of Cheminformatics article Computer Science Computational Drug Discovery Methods Open access
Marina Gorostiola González, Remco L. van den Broek, Magdalini Chatzopoulou, Willem Jespers, Adriaan P. IJzerman, Laura H. Heitman, +1 more
6citations -
The Role of IgM Anti‐acetylated Protein Antibodies and B Cells in the Origin of Antimodified Protein Autoimmunity in Rheumatoid Arthritis2026 Arthritis & Rheumatology article Medicine Rheumatoid Arthritis Research and Therapies Open access
Aegli Athanasiadou, Sanne Kroos, Renee van de Wetering, Rian Schopmeijer, Carin van der Keur, Michael Eikmans, +5 more
0citations -
Lineage-specific microbial protein prediction enables large-scale exploration of protein ecology within the human gut2025 Nature Communications article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Matthias A. Schmitz, Nicholas J Dimonaco, Thomas Clavel, Thomas C. A. Hitch
9citations -
Lineage-specific microbial protein prediction enables large-scale exploration of protein ecology within the human gut2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Matthias A. Schmitz, Nicholas J Dimonaco, Thomas Clavel, Thomas C. A. Hitch
1citations -
Unsupervised protein embeddings outperform hand-crafted sequence and structure features at predicting molecular function2020 Bioinformatics article Biochemistry, Genetics and Molecular Biology Machine Learning in Bioinformatics Open access cited by 2 patents
Amelia Villegas-Morcillo, Stavros Makrodimitris, Roeland C. H. J. van Ham, Angel Manuel Gomez, Marcel J. T. Reinders
137citations -
Evolutionary Probability and Stacked Regressions Enable Data-Driven Protein Engineering with Minimized Experimental Effort2024 Journal of Chemical Information and Modeling article Biochemistry, Genetics and Molecular Biology Protein Structure and Dynamics
Alexander-Maurice Illig, Niklas E. Siedhoff, Mehdi D. Davari, Ulrich Schwaneberg
3citations -
Should LC-MS/MS Be the Reference Measurement Procedure to Determine Protein Concentrations in Human Samples?2020 Clinical Chemistry article Medicine Clinical Laboratory Practices and Quality Control Open access
Andrew N. Hoofnagle, Christa M. Cobbaert, Vincent Delatour, Neil L. Kelleher, Mark S. Lowenthal, Christopher M. Shuford
27citations -
A hybrid model combining evolutionary probability and machine learning leverages data-driven protein engineering2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Protein Structure and Dynamics Open access
Alexander-Maurice Illig, Niklas E. Siedhoff, Ulrich Schwaneberg, Mehdi D. Davari
11citations -
Adaptation of DNA to Protein Binding Revealed by Spectroscopy and Molecular Simulation2025 The Journal of Physical Chemistry B article Biochemistry, Genetics and Molecular Biology DNA and Nucleic Acid Chemistry Open access
Thor van Heesch, Sudhanshu Sharma, Bert van Erp, Alberto Pérez de Alba Ortíz, Remus Thei Dame, Jocelyne Vreede, +1 more
2citations -
Phyletic distribution and diversification of the Phage Shock Protein stress response system in bacteria and archaea2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bacterial Genetics and Biotechnology Open access
Philipp F. Popp, Vadim M. Gumerov, Ekaterina P. Andrianova, Lisa Bewersdorf, Thorsten Mascher, Igor B. Zhulin, +1 more
5citations -
Ten numbers from the Laplace–Beltrami spectrum facilitate training-free classification of protein structures based on surface shape2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Protein Structure and Dynamics Open access
Miriam Fernández-Giro Muñoz, Jessica Emonts, Benjamin Berkels, Johannes F. Buyel
0citations -
PyTEA-O: a Python implementation of Two-Entropies Analysis for protein sequence variation analysis2026 Bioinformatics article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Rosan C.M. Kuin, Alexander Thomas Julian, J Chander, S Lee, Gerard J. P. van Westen
2citations