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In-Depth Characterization of the Clostridioides difficile Phosphoproteome to Identify Ser/Thr Kinase Substrates2022 Molecular & Cellular Proteomics article Medicine Clostridium difficile and Clostridium perfringens research Open access
Tránsito García‐García, Thibaut Douché, Quentin Giai Gianetto, Sandrine Poncet, Nesrine El Omrani, Wiep Klaas Smits, +3 more
20citations -
Causal integration of multi‐omics data with prior knowledge to generate mechanistic hypotheses2021 Molecular Systems Biology article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Aurélien J. F. Dugourd, Christoph Kuppe, Marco Sciacovelli, Enio Gjerga, Attila Gábor, Kristina Bennet Emdal, +12 more
156citations -
Integrated Proteomics Unveils Nuclear PDE3A2 as a Regulator of Cardiac Myocyte Hypertrophy2023 Circulation Research article Biochemistry, Genetics and Molecular Biology Phosphodiesterase function and regulation Open access
Gunasekaran Subramaniam, Katharina Schleicher, Duangnapa Kovanich, Anna Zerio, Milda Folkmanaite, Ying‐Chi Chao, +15 more
29citations -
A structural machine learning approach for rapid prediction of thermodynamically destabilizing tyrosine phosphorylations2025 Cell Reports Methods article Biochemistry, Genetics and Molecular Biology Machine Learning in Bioinformatics Open access
Jaie C. Woodard, Atena Malemir Chegini, Jian Tian, Rupa Bhowmick, Subramaniam Pennathur, Alireza Mashaghi, +2 more
3citations -
PHONEMeS: Efficient Modeling of Signaling Networks Derived from Large-Scale Mass Spectrometry Data2021 Journal of Proteome Research article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Enio Gjerga, Aurélien J. F. Dugourd, Luis Tobalina, Abel Sousa, Julio Sáez-Rodríguez
32citations -
Combined Quantitative (Phospho)proteomics and Mass Spectrometry Imaging Reveal Temporal and Spatial Protein Changes in Human Intestinal Ischemia–Reperfusion2021 Journal of Proteome Research article Chemistry Advanced Proteomics Techniques and Applications Open access
Anna M. Kip, Juan Manuel Valverde, Maarten A. F. Altelaar, Ron M. A. Heeren, Inca H. R. Hundscheid, Cornelis H.C. Dejong, +3 more
18citations -
Quantitative phosphoproteomics to unravel the cellular response to chemical stressors with different modes of action2020 Archives of Toxicology article Chemistry Advanced Proteomics Techniques and Applications Open access
Bharath K. Sampadi, Alex Pines, Stephanie Munk, Branislav Mišovic, Anton J.L. de Groot, Bob van de Water, +3 more
17citations -
Modulation of nucleotide metabolism by picornaviruses2024 PLoS Pathogens article Biochemistry, Genetics and Molecular Biology Biochemical and Molecular Research Open access
Lonneke V. Nouwen, Martijn Breeuwsma, Esther A. Zaal, Chris H.A. van de Lest, Inge Buitendijk, Marleen Zwaagstra, +4 more
14citations -
Insights from the First Phosphopeptide Challenge of the MS Resource Pillar of the HUPO Human Proteome Project2020 Journal of Proteome Research article Chemistry Advanced Proteomics Techniques and Applications Open access
Michael R. Hoopmann, Ulrike Kusebauch, Magnus Palmblad, Nuno Bandeira, David D. Shteynberg, Ling-jie He, +5 more
10citations -
CellEKT: A Robust Chemical Proteomics Workflow to Profile Cellular Target Engagement of Kinase Inhibitors2025 Molecular & Cellular Proteomics article Chemistry Advanced Proteomics Techniques and Applications Open access
Joel Rüegger, Berend Gagestein, Antonius P. A. Janssen, Alexandra Valeanu, Alger Lazo Mori, Marielle van der Peet, +16 more
9citations -
FtsZ phosphorylation pleiotropically affects Z-ladder formation, antibiotic production, and morphogenesis in Streptomyces coelicolor2022 Antonie van Leeuwenhoek article Biochemistry, Genetics and Molecular Biology Bacterial Genetics and Biotechnology Open access
Paula Yagüe, Joost J. Willemse, Xiansha Xiao, Le Zhang, Ángel Manteca, Gilles P. van Wezel
7citations -
Community-driven advances in computational mass spectrometry: The perspective of EuBIC-MS members2026 Journal of Proteomics article Chemistry Advanced Proteomics Techniques and Applications Open access
Dirk Winkelhardt, Julia Patricia Schessner, Sven Berres, Alireza Nameni, Armin Soleymaniniya, Ayla Schröder, +17 more
0citations -
Activated Dendritic Cells Round their Nuclei through Adhesion Loss and Atypical Cofilin Signaling2022 Zenodo (CERN European Organization for Nuclear Research) article Biochemistry, Genetics and Molecular Biology Nuclear Structure and Function Open access
Harry M. Warner, Giulia Franciosa, Guus van der Borg, Felix Faas, Claire Koenig, Rinse de Boer, +12 more
0citations
25 results