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In-depth specificity profiling of Pro-Pro endopeptidases (PPEPs) using combinatorial synthetic peptide libraries2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Protease and Inhibitor Mechanisms Open access
Bart Claushuis, Robert A. Cordfunke, Arnoud H. de Ru, Annemarie M. Otte, Hans C. van Leeuwen, Oleg I. Klychnikov, +4 more
0citations -
CycloSELs – Massive Screening Platform of barcode-free macrocycle libraries enables the identification of cell-penetrating PPI inhibitors2025 ChemRxiv preprint Biochemistry, Genetics and Molecular Biology Chemical Synthesis and Analysis Open access
J. Miguel Mata, Jingming Liu, Marije Havermans, Sean M. McKenna, Edith van der Nol, Ruud Delwel, +1 more
0citations -
PAIR-Scan: Single-step identification of highly potent TCR–neoantigen pairs through library-on-library screening2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology Immunotherapy and Immune Responses Open access
Marius Messemaker, Connor A. Richterich, Jule Wenner, Yiting Ma, Živa Moravec, Rhianne Voogd, +19 more
0citations -
Instrument-Software Synergy in Proteomics: Systematic Evaluation Across Mass Spectrometry Platforms, Search Engines, and Rescoring Methods2026 Zenodo (CERN European Organization for Nuclear Research) preprint Chemistry Advanced Proteomics Techniques and Applications Open access
Sander Heyndrickx, Ralf Gabriels, Robbin Bouwmeester, Robbe Devreese, Arthur Declercq, Lennart Martens, +7 more
0citations -
Instrument-Software Synergy in Proteomics: Systematic Evaluation Across Mass Spectrometry Platforms, Search Engines, and Rescoring Methods2026 Zenodo (CERN European Organization for Nuclear Research) preprint Chemistry Advanced Proteomics Techniques and Applications Open access
Sander Heyndrickx, Ralf Gabriels, Robbin Bouwmeester, Robbe Devreese, Arthur Declercq, Lennart Martens, +7 more
0citations -
RRE-Finder: A Genome-Mining Tool for Class-Independent RiPP Discovery2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Microbial Natural Products and Biosynthesis Open access
Alexander Kloosterman, Kyle E. Shelton, Gilles P. van Wezel, Marnix H. Medema, Douglas A. Mitchell
15citations -
Analysis of protein secretion in Bacillus subtilis by combining a secretion stress biosensor strain with an in vivo split GFP assay2023 Research Square preprint Biochemistry, Genetics and Molecular Biology Bacterial Genetics and Biotechnology Open access
Patrick J. Bakkes, Carolin Müller, Marzena Malek, Roland Freudl, Marco Oldiges, Thomas Drepper, +2 more
0citations -
Physics-based generative model of curvature sensing peptides; distinguishing sensors from binders2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Lipid Membrane Structure and Behavior Open access
Niek van Hilten, Jeroen Methorst, Nino Verwei, Herre Jelger Risselada
2citations -
Integration of machine learning and pan-genomics expands the biosynthetic landscape of RiPP natural products2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Microbial Natural Products and Biosynthesis Open access
Alexander Kloosterman, Peter Cimermančič, Somayah S. Elsayed, Chao Du, Michalis Hadjithomas, Mohamed S. Donia, +3 more
5citations -
A β-Hairpin Epitope as Novel Structural Requirement for Protein Arginine Rhamnosylation2020 ChemRxiv preprint Biochemistry, Genetics and Molecular Biology Glycosylation and Glycoproteins Research Open access
Nathaniel I. Martin, Marthe T. C. Walvoort, Liubov Yakovlieva, Thomas Keith Wood, Johan Kemmink, Franziska Koller, +2 more
0citations
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