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REDCap Ontology Annotation Made Easy (ROME) – A REDCap Module for Simplified Metadata Element Annotation2026 Studies in health technology and informatics book-chapter Medicine Biomedical Text Mining and Ontologies Open access
Christof Meigen, Sophie Anne Inès Klopfenstein, Andrea Groselj‐Strele, Matthias Löbe, Jonathan M. Mang, Dustin Thewes, +1 more
0citations -
ACO2 clinicobiological dataset with extensive phenotype ontology annotation2021 Scientific Data data-paper Biochemistry, Genetics and Molecular Biology Genomics and Rare Diseases Open access
Khadidja Guehlouz, Thomas Foulonneau, Patrizia Amati‐Bonneau, Majida Charif, Estelle Colin, Céline Bris, +9 more
8citations -
Curation and expansion of Human Phenotype Ontology for defined groups of inborn errors of immunity2021 Journal of Allergy and Clinical Immunology article Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Matthias Haimel, Júlia Pázmándi, Raúl Jiménez Heredia, Jasmin Dmytrus, Sevgi Köstel Bal, Samaneh Zoghi, +32 more
33citations -
GeneSurfer enables transcriptome-wide exploration and annotation of gene co-expression modules in 3D spatial transcriptomics data2025 iScience article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Chang Li, Julian Thijssen, Thomas Kroes, Ximaine R. van der Burg, Louise van der Weerd, Thomas Höllt, +1 more
2citations -
GeneSurfer Enables Transcriptome-wide Exploration and Functional Annotation of Gene Co-expression Modules in 3D Spatial Transcriptomics Data2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Chang Li, Julian Thijssen, Thomas Kroes, Ximaine R. van der Burg, Louise van der Weerd, Thomas Höllt, +1 more
0citations -
The Cell Ontology in the age of single-cell omics2026 eScholarship (California Digital Library) article Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Shawn Zheng Kai Tan, Aleix Puig-Barbe, Damien Goutte-Gattat, Caroline Eastwood, Brian D. Aevermann, Alida Avola, +29 more
7citations -
Semantic Annotation of Experimental Methods in Analytical Chemistry2022 Analytical Chemistry article Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Magnus Palmblad, Enahoro Asein, Nina P. Bergman, A. P. Ivanova, Lukas Ramasauskas, Hazzar Mohammed Reyes, +3 more
3citations -
Additional file 4 of Refining bulk segregant analyses: ontology-mediated discovery of flowering time genes in Brassica oleracea2022 Figshare dataset Biochemistry, Genetics and Molecular Biology Genetic Mapping and Diversity in Plants and Animals Open access
Rutger Aldo Vos, Catharina A. M. van der Veen‐van Wijk, M. Eric Schranz, Klaas Vrieling, Peter G. L. Klinkhamer, Frederic Lens
0citations -
Refining bulk segregant analyses: ontology-mediated discovery of flowering time genes in Brassica oleracea2022 Plant Methods article Biochemistry, Genetics and Molecular Biology Genetic Mapping and Diversity in Plants and Animals Open access
Rutger Aldo Vos, Catharina A. M. van der Veen‐van Wijk, M. Eric Schranz, Klaas Vrieling, Peter G. L. Klinkhamer, Frederic Lens
2citations -
Refining Bulk Segregant Analyses: Ontology-Mediated Discovery of Flowering Time Genes in Brassica oleracea2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genetic Mapping and Diversity in Plants and Animals Open access
Rutger Aldo Vos, Catharina A. M. van der Veen‐van Wijk, M. Eric Schranz, Klaas Vrieling, Peter G. L. Klinkhamer, Frederic Lens
0citations -
D5.2.2.1 Integrated NFDI4Energy simulation scenario ontology2026 Zenodo (CERN European Organization for Nuclear Research) article Computer Science Modeling and Simulation Systems Open access
Jan Sören Schwarz, Laura Fuentes Grau, Nan Liu, Zhiyu Pan, Ramiz Qussous, Philipp Schmurr, +2 more
0citations -
An Update on MRMAssayDB: A Comprehensive Resource for Targeted Proteomics Assays in the Community2021 Journal of Proteome Research article Chemistry Advanced Proteomics Techniques and Applications Open access
Pallab Bhowmick, Simon Roome, Christoph H. Borchers, David R. Goodlett, Yassene Mohammed
23citations