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The Network Zoo: a multilingual package for the inference and analysis of gene regulatory networks2023 Genome biology article Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access
Marouen Ben Guebila, Tian Wang, Camila M. Lopes‐Ramos, Viola Fanfani, Des Weighill, Rebekka Burkholz, +19 more
56citations -
scMEGA: single-cell multi-omic enhancer-based gene regulatory network inference2023 Bioinformatics Advances article Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access cited by 1 patent
Zhijian Li, James Shiniti Nagai, Christoph Kuppe, Rafael Kramann, Ivan G. Costa
41citations -
Systematic Evaluation of Normalization Methods for Glycomics Data Based on Performance of Network Inference2020 Metabolites article Biochemistry, Genetics and Molecular Biology Glycosylation and Glycoproteins Research Open access
Elisa Benedetti, Nathalie Gerstner, Maja Pučić‐Baković, Toma Keser, Karli R. Reiding, L. Renee Ruhaak, +11 more
22citations -
A novel metric to measure spatio-temporal proximity: a case study analyzing children’s social network in schoolyards2023 Applied Network Science article Physics and Astronomy Complex Network Analysis Techniques Open access
Maedeh Nasri, Mitra Baratchi, Yung‐Ting Tsou, Sarah N. Giest, Alexander Koutamanis, Carolien J. Rieffe
5citations -
Trans-dimensional Bayesian model averaging for 13C-metabolic flux analysis: evidence-based flux inference under structural model uncertainty2026 Bioinformatics article Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Johann F. Jadebeck, Anton Stratmann, Martin Beyß, Katharina Nöh
0citations -
High-throughput parameter estimation from experimental data using Bayesian Inference with accelerated sampling2026 npj Computational Materials article Materials Science Machine Learning in Materials Science Open access
Basita Das, William Heymann, Yueming Wang, Uwe Rau, Thomas Kirchartz, Tonio Buonassisi
0citations -
Species abundance correlations carry limited information about microbial network interactions2022 PLoS Computational Biology article Environmental Science Microbial Community Ecology and Physiology Open access
Susanne Pinto, Elisa Benincà, Egbert H. van Nes, Marten Scheffer, Johannes A. Bogaards
33citations -
An online notebook resource for reproducible inference, analysis and publication of gene regulatory networks2022 Nature Methods article Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access
Marouen Ben Guebila, Deborah A. Weighill, Camila M. Lopes‐Ramos, Rebekka Burkholz, Romana T Pop, Kalyan Palepu, +8 more
13citations -
Accelerating Deep Learning Inference in Constrained Embedded Devices Using Hardware Loops and a Dot Product Unit2020 IEEE Access article Computer Science Parallel Computing and Optimization Techniques Open access cited by 1 patent
Jure Vreča, Karl J. X. Sturm, Ernest Gungl, Farhad Merchant, Paolo Bientinesi, Rainer Leupers, +1 more
17citations -
Network analysis: An overview for mental health research2024 International Journal of Methods in Psychiatric Research article Psychology Mental Health Research Topics Open access
Giovanni Briganti, Marco Scutari, Sacha Epskamp, Denny Borsboom, Ria H. A. Hoekstra, Hudson Fernandes Golino, +16 more
140citations -
A strategy to incorporate prior knowledge into correlation network cutoff selection2020 Nature Communications article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Elisa Benedetti, Maja Pučić‐Baković, Toma Keser, Nathalie Gerstner, Mustafa Büyüközkan, Tamara Štambuk, +9 more
29citations