Papers matching “multiple sequence alignment” 30
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PyTEA-O: a Python implementation of Two-Entropies Analysis for protein sequence variation analysis2026 Bioinformatics article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Rosan C.M. Kuin, Alexander Thomas Julian, J Chander, S Lee, Gerard J. P. van Westen
2citations -
TEtrimmer: a novel tool to automate the manual curation of transposable elements2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Chromosomal and Genetic Variations Open access
Jiangzhao Qian, Hang Xue, Shujun Ou, Jessica M. Storer, Lisa Fürtauer, Mary C. Wildermuth, +2 more
7citations -
Structural Filtering Identifies Candidate Rheostat Positions Across Enzyme Systems2026 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Protein Structure and Dynamics Open access
J Chander, Alexander Julian, S Lee, Andrew Howard, Rosan C.M. Kuin
0citations -
Data and Computational Outputs Supporting Structural Filtering Identifies Candidate Rheostat Positions Across Protein Systems2026 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Protein Structure and Dynamics Open access
J Chander, Alexander Julian, S Lee, Andrew Howard, Rosan C.M. Kuin
0citations -
Multiple origins of insular woodiness on the Canary Islands are consistent with palaeoclimatic aridification2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Mediterranean and Iberian flora and fauna Open access
Alexander Hooft van Huysduynen, Steven B. Janssens, Vincent S. F. T. Merckx, Rutger Aldo Vos, Luís Valente, Alexander Zizka, +11 more
3citations -
Spin–Orbit Geometry of AU Mic b and c from Back-to-back Transits Observed Contemporaneously with Magellan PFS, LCOGT, and CHEOPS*2026 The Astrophysical Journal Letters article Physics and Astronomy Stellar, planetary, and galactic studies Open access
Zitao Lin, Gyula M. Szabó, Krzysztof Sz. Zieliński, Zhen Guo, Z. Garai, R. Paul Butler, +32 more
0citations -
MGcount: a total RNA-seq quantification tool to address multi-mapping and multi-overlapping alignments ambiguity in non-coding transcripts2022 BMC Bioinformatics article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access cited by 2 patents
Andrea Hita, Gilles Brocart, Marc Rehmsmeier, Anna Alemany, Sol Schvartzman
17citations -
D18-09 The Multiorgan Multicenter Spatial Transcriptomics Atlas Reveals Layered Granuloma Architecture and Cellular Programs Driving Sarcoidosis2026 American Journal of Respiratory and Critical Care Medicine article Medicine Sarcoidosis and Beryllium Toxicity Research
Jannik Ruwisch, Leonard Christian, Stephan Traidl, J Dietrich, J-C Kamp, Janis Casper, +19 more
0citations -
Reference-based cell type matching of in situ image-based spatial transcriptomics data on primary visual cortex of mouse brain2023 Scientific Reports article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Yun Zhang, Jeremy A. Miller, Jeongbin Park, Boudewijn P. F. Lelieveldt, Brian Long, Tamim Abdelaal, +12 more
20citations -
O-300 Characterization of the transcriptional changes of human endometrium across the window of implantation during natural cycles reveals consistent dynamics2025 Human Reproduction conference-abstract Immunology and Microbiology Reproductive System and Pregnancy Open access
Irene Miguel-Escalada, Berta Gayete-Mor, Lucía Álvarez-González, Marta Trullenque, Anna Blázquez, J J Guillén-Quílez, +7 more
0citations -
Variant Calling in the Dark Genome: Benchmarking SNV Calls in the Flanks of Structural Variants2026 Genomics Proteomics & Bioinformatics article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Ningxin Dang, Peng Jia, Jiadong Lin, Yongyong Kang, Z K Li, Kai Ye, +1 more
0citations -
Insertions of codons encoding basic amino acids in H7 hemagglutinins of influenza A viruses occur by recombination with RNA at hotspots near snoRNA binding sites2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Influenza Virus Research Studies Open access
Alexander P. Gultyaev, Monique I. J. Spronken, Mathis Funk, Ron A. M. Fouchier, Mathilde Richard
4citations -
Ancient genomics support deep divergence between Eastern and Western Mediterranean Indo-European languages2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Forensic and Genetic Research Open access
Fulya Eylem Yediay, Guus Kroonen, Serena Sabatini, Karin Margarita Frei, Anja B. Frank, Thomaz Pinotti, +84 more
4citations -
A graph-based approach to variant description extraction from sequences2025 NAR Genomics and Bioinformatics article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Mark Santcroos, Walter A. Kosters, Mihai Lefter, Jeroen F. J. Laros, Jonathan K. Vis
0citations -
Rapid liquid biopsy assessment through gene profiling from the kidney biopsy transport medium: a technical validation and a proof-of-concept pilot study2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Molecular Biology Techniques and Applications Open access
Ziyang Li, Marij J.P. Welters, Baptiste Lamarthée, Aiko P. J. de Vries, Hans J. Baelde, Jesper Kers
0citations