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Longitudinal analysis of the gut microbiome in adolescent patients with anorexia nervosa: microbiome-related factors associated with clinical outcome2024 Gut Microbes article Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access
Nadia Andrea Andreani, Arunabh Sharma, Brigitte Dahmen, Hannah E. Specht, Nina Mannig, Vanessa Ruan, +5 more
44citations -
Longitudinal analysis of the gut microbiome in adolescent patients with anorexia nervosa: microbiome-related factors associated with clinical outcome2023 medRxiv preprint Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access
Nadia Andrea Andreani, Arunabh Sharma, Brigitte Dahmen, Hannah E. Specht, Nina Mannig, Vanessa Ruan, +5 more
3citations -
The Roles of Gut Microbiome and Plasma Metabolites in the Associations between ABO Blood Groups and Insulin Homeostasis: The Microbiome and Insulin Longitudinal Evaluation Study (MILES)2022 Metabolites article Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access
Ruifang Li‐Gao, Kirk J. Grubbs, Alain Gerald Bertoni, Kristi Louise Hoffman, Joseph F. Petrosino, Gautam Ramesh, +10 more
5citations -
Impact of the fungal pathogen Fusarium oxysporum on the taxonomic and functional diversity of the common bean root microbiome2023 Environmental Microbiome article Agricultural and Biological Sciences Plant-Microbe Interactions and Immunity Open access
Lucas William Mendes, Jos M. Raaijmakers, Mattias de Hollander, Edis Sepo, Ruth Gómez Expósito, Alisson Fernando Chiorato, +3 more
71citations -
Reciprocal interactions between the sorghum root microbiome and the parasitic weed Striga hermonthica2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Plant Parasitism and Resistance Open access
Desalegn W. Etalo, Dominika Rybka, Lorenzo Lombard, Márcio Fernandes Alves Leite, Adam Ossowicki, Francisco Dini‐Andreote, +5 more
0citations -
Successive cultivation under drought selects for specific microbiome members in the wheat rhizosphere2026 FEMS Microbiology Ecology article Agricultural and Biological Sciences Plant-Microbe Interactions and Immunity Open access
Adele Pioppi, Sofia I. F. Gomes, Mette Haubjerg Nicolaisen, Xinming Xu, Ákos T. Kovács
0citations -
Unveiling the ecological processes driving soil and lichen microbiome assembly along an urbanization gradient2025 npj Biofilms and Microbiomes article Environmental Science Microbial Community Ecology and Physiology Open access
Panji Cahya Mawarda, Rens van der Kaaij, Francisco Dini‐Andreote, Deniz Antonie Duijker, Michael Stech
9citations -
The Microbiome in Bronchial Biopsies from Smokers and Ex-Smokers with Stable COPD - A Metatranscriptomic Approach2022 COPD Journal of Chronic Obstructive Pulmonary Disease article Medicine Chronic Obstructive Pulmonary Disease (COPD) Research Open access
Benedikt Ditz, Jeunard Boekhoudt, Natacha Couto, Corry‐Anke Brandsma, Pieter Sicco Hiemstra, Gaik Wei Tew, +8 more
1citations -
High conservation of the dental plaque microbiome community across populations with differing subsistence strategies and levels of market integration2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Dentistry Oral microbiology and periodontitis research Open access
Irina M. Velsko, Sandrine Gallois, Raphaela Stahl, Amanda G. Henry, Christina Warinner
2citations -
AGORA2: Large scale reconstruction of the microbiome highlights wide-spread drug-metabolising capacities2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access
Almut Heinken, Geeta Acharya, Dmitry A. Ravcheev, Johannes Hertel, Malgorzata Nyga, Onyedika Emmanuel Okpala, +7 more
37citations -
Metadata harmonization–Standards are the key for a better usage of omics data for integrative microbiome analysis2022 Environmental Microbiome article Computer Science Research Data Management Practices Open access
Tomislav Cernava, Daria Rybakova, François Buscot, Thomas Clavel, Alice Carolyn McHardy, Fernando Meyer, +45 more
59citations -
Function-based selection of synthetic communities enables mechanistic microbiome studies2025 The ISME Journal article Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access
Thomas C. A. Hitch, Silvia Bolsega, Charlotte Deschamps, Lucie Etienne‐Mesmin, Nicole Simone Treichel, Stéphanie Blanquet‐Diot, +3 more
18citations -
Repeated exposure of wheat to the fungal root pathogen Bipolaris sorokiniana modulates rhizosphere microbiome assembly and disease suppressiveness2023 Environmental Microbiome article Agricultural and Biological Sciences Plant-Microbe Interactions and Immunity Open access
Lilian Simara Abreu Soares Costa, Mírian Rabelo de Faria, Josiane Barros Chiaramonte, Lucas William Mendes, Edis Sepo, Mattias de Hollander, +6 more
23citations -
Taxonomic and functional profiling of the vulvar microbiome indicates variations related to ecological signatures, aging, and health status2025 Frontiers in Microbiology article Immunology and Microbiology Reproductive tract infections research Open access
Arnout Mieremet, Michelle van der Wurff, Lisa Pagan, Edgar Ferrer-González, Jinjong Seo, Frank H. J. Schuren
4citations -
Successive plant growth amplifies genotype-specific assembly of the tomato rhizosphere microbiome2021 The Science of The Total Environment article Agricultural and Biological Sciences Plant-Microbe Interactions and Immunity Open access
Viviane Cordovez, Cristina Rotoni, Francisco Dini‐Andreote, Ben O. Oyserman, Víctor J. Carrión, Jos M. Raaijmakers
93citations