Microbial function matters: Microbiome-aware nano-ecotoxicology needs functional endpoints besides compositional data

Chemosphere, vol. 369, pp. 143905

Abstract

The microbiome provides an active barrier to the external environment and aids in the metabolism of the host. Nanomaterials are known to interact with this microbiome host plane. Given the recent advances in techniques to study the microbiome, there has been a vast increase in studies trying to find causality in host response via the microbiome in nano-ecotoxicology. Our review integrates the latest advancements in understanding the microbiome's role in elucidating host health related to nanomaterial exposure, thereby explicitly emphasizing the gap between compositional and functional studies. Both the techniques used to interfere and the current understanding of microbiome-host relationships in nano-ecotoxicology are discussed. To further highlight the functional side of the microbiome, we performed an explorative meta-analysis to bridge the gap between top-down and bottom-up studies. This review gives a perspective on generalising microbiome-aware nano-ecotoxicology and discusses methodologies to enhance the interpretation of nanomaterial or chemical exposure to host-microbiome interactions. The current study discloses that correlations built on compositional data are not a good proxy for host outcome and more in-depth analysis coupled with functional analysis should be explored more in microbiome-aware nano-ecotoxicology.

Authors 3

1. Jesse Ouwehand Aachen Institute of Environmental Sciences (CML)

   Leiden University

   Affiliation as printed

   Institute of Environmental Sciences (CML), Leiden University, P.O. Box 9518, Leiden, 2300, RA, the Netherlands. Electronic address: j.ouwehand@cml.leidenuniv.nl

2. Willie J.G.M. Peijnenburg Aachen

   Leiden University · National Institute for Public Health and the Environment

   Affiliation as printed

   Institute of Environmental Sciences (CML), Leiden University, P.O. Box 9518, Leiden, 2300, RA, the Netherlands; National Institute of Public Health and the Environment (RIVM), P.O. Box 1, Bilthoven, the Netherlands

3. Martina G. Vijver Aachen Institute of Environmental Sciences (CML)

   Leiden University

   Affiliation as printed

   Institute of Environmental Sciences (CML), Leiden University, P.O. Box 9518, Leiden, 2300, RA, the Netherlands