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A machine learning method for the discovery of minimum marker gene combinations for cell type identification from single-cell RNA sequencing2021 Genome Research preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Brian D. Aevermann, Yun Zhang, Mark A. Novotny, Mohamed Keshk, Trygve E. Bakken, Jeremy A. Miller, +4 more
96citations -
NS-Forest: A machine learning method for the objective identification of minimum marker gene combinations for cell type determination from single cell RNA sequencing2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Brian D. Aevermann, Yun Zhang, Mark A. Novotny, Trygve E. Bakken, Jeremy A. Miller, Rebecca D. Hodge, +3 more
12citations -
CRISPR/Cas with ribonucleoprotein complexes and transiently selected telomere vectors allows highly efficient marker-free and multiple genome editing in Botrytis cinerea2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology CRISPR and Genetic Engineering Open access
Thomas Leisen, Fabian Bietz, Alex Wegner, Ulrich Schaffrath, David Scheuring, Felix Willmund, +3 more
18citations -
Hybrid zone analysis confirms cryptic species of banded newt and does not support competitive displacement since secondary contact2023 preprint Biochemistry, Genetics and Molecular Biology Genetic diversity and population structure
Konstantinos Kalaentzis, Jan W. Arntzen, Aziz Avcı, Wouter Beukema, James France, Kurtuluş Olgun, +4 more
2citations -
Tankyrase inhibition demonstrates anti-fibrotic effects in preclinical pulmonary fibrosis models2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Interstitial Lung Diseases and Idiopathic Pulmonary Fibrosis Open access
Shoshy Alam Brinch, Ida Johnsen, Lena Willmer, Ole Vidhammer Bjørnstad, Teresa Lucifora, Karl Martin Forbord, +20 more
0citations -
Benchmarking Imputation Methods for Single-Cell RNA Sequencing Data Using Peripheral Blood Mononuclear Cells from Acute Myocardial Infarction Patients0citations
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Tsc1 haploinsufficiency leads to Pax2 dysregulation in the developing murine cerebellum2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Tuberous Sclerosis Complex Research Open access
Ines Serra, Ana Stravs, Catarina Osório, Maria Roa Oyaga, Martijn Schonewille, Christian Tudorache, +1 more
0citations -
A toolkit for transposon libraries and functional genomics in intestinal Bacteroidales2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bacterial Genetics and Biotechnology Open access
Carlos Geert Pieter Voogdt, Indra Roux, Nicolai Karcher, Afonso Martins Bravo, Lajos Kalmár, Vallo Varik, +4 more
5citations -
A Framework for NGN1-Induced Sensory Neuron Differentiation for Disease Modelling and Drug Screening2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Pluripotent Stem Cells Research Open access
Anika Neureiter, Marlene Menke, Veronica Donde, Cedric Guenther, Lennart Mueller, Florian Kraft, +10 more
0citations
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