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Predicting metabolic preferences through transcriptomics: a data-driven approach to align metabolic signatures with gene expression profiles2025 Biochemistry and Biophysics Reports article Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Lente J. S. Lerink, Marleen J de Winter, Ian P.J. Alwayn, Rutger J. Ploeg, John F. Mulvey, Jan H.N. Lindeman
1citations -
The modular pYT vector series employed for chromosomal gene integration and expression to produce carbazoles and glycolipids in P. putida2022 FEMS Microbes article Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Robin Weihmann, Sonja Kubicki, Nora Lisa Bitzenhofer, Andreas Domröse, Isabel Bator, Lisa-Marie Kirschen, +8 more
6citations -
Immune-related Gene Expression Predicts Response to Neoadjuvant Chemotherapy but not Additional Benefit from PD-L1 Inhibition in Women with Early Triple-negative Breast Cancer2021 Clinical Cancer Research article Biochemistry, Genetics and Molecular Biology Breast Cancer Treatment Studies
Bruno Valentin Sinn, Sibylle Loibl, Claus Alexander Hanusch, Dirk-Michael Zahm, Hans‐Peter Sinn, Michael Untch, +16 more
46citations -
Early and late stage MPN patients show distinct gene expression profiles in CD34+ cells2021 Annals of Hematology article Medicine Myeloproliferative Neoplasms: Diagnosis and Treatment Open access
Julian Baumeister, Tiago Maié, Nicolas Chatain, Barbora Weinbergerová, Marcelo A. S. Toledo, Jörg Eschweiler, +9 more
24citations -
A machine learning method for the discovery of minimum marker gene combinations for cell type identification from single-cell RNA sequencing2021 Genome Research preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Brian D. Aevermann, Yun Zhang, Mark A. Novotny, Mohamed Keshk, Trygve E. Bakken, Jeremy A. Miller, +4 more
96citations -
NS-Forest: A machine learning method for the objective identification of minimum marker gene combinations for cell type determination from single cell RNA sequencing2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Brian D. Aevermann, Yun Zhang, Mark A. Novotny, Trygve E. Bakken, Jeremy A. Miller, Rebecca D. Hodge, +3 more
12citations -
Integrating Gene Expression Analysis and Ecophysiological Responses to Water Deficit in Leaves of Tomato Plants2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Plant Stress Responses and Tolerance Open access
Giovanni Bortolami, Tobias de Werk, Maximilian Larter, Ajaree Thonglim, Bernd Mueller‐Roeber, Salma Balazadeh, +1 more
1citations -
A Novel Branched DNA-Based Flowcytometric Method for Single-Cell Characterization of Gene Therapy Products and Expression of Therapeutic Genes2021 Frontiers in Immunology article Biochemistry, Genetics and Molecular Biology Virus-based gene therapy research Open access
Laura García-Pérez, Marja C.J.A. van Eggermond, Elisa Maietta, Marie‐Louise van der Hoorn, Karin Pike‐Overzet, Frank J. T. Staal
8citations -
Marker and readout genes for priming in the Arabidopsis – Pseudomonas cannabina pv. alisalensis interaction2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Plant-Microbe Interactions and Immunity Open access
Andrea J. Sistenich, Lisa Fürtauer, Franziska Scheele, Uwe Conrath
0citations -
Amyloid precursor protein as a fibrosis marker in infants with biliary atresia2024 Pediatric Research article Medicine Pediatric Hepatobiliary Diseases and Treatments Open access
Jan C. Kamp, Omid Madadi‐Sanjani, Marie Uecker, Christopher Werlein, Lavinia Neubert, Joachim F. Kübler, +8 more
3citations -
Interferon-gamma signature as prognostic and predictive marker in macroscopic stage III melanoma2024 Journal for ImmunoTherapy of Cancer article Medicine Cutaneous Melanoma Detection and Management Open access
Judith M. Versluis, Stéphanie A. Blankenstein, Petros Dimitriadis, James S. Wilmott, Robert Elens, Willeke A.M. Blokx, +11 more
25citations -
Co-expression patterns of microglia markers Iba1, TMEM119 and P2RY12 in Alzheimer's disease2022 Neurobiology of Disease article Neuroscience Neuroinflammation and Neurodegeneration Mechanisms Open access
Boyd Kenkhuis, Antonios Somarakis, Lynn R.T. Kleindouwel, Willeke van Roon‐Mom, Thomas Höllt, Louise van der Weerd
190citations -
Rheumatoid arthritis susceptibility genes show pathotype-specific expression in synovial tissue of patients with early treatment-naïve RA2026 Annals of the Rheumatic Diseases article Medicine Rheumatoid Arthritis Research and Therapies Open access
Inez C Den Hond, Marcel J. T. Reinders, Myles Lewis, Felice Rivellese, Costantino Pitzalis, Soon Wei Wong, +3 more
0citations -
Single-Cell-Multiomics Demonstrates Molecular Efficacy of a Clinical Lentiviral Vector for Gene Therapy of RPS19-Deficient Diamond-Blackfan Anemia2023 Blood conference-abstract Biochemistry, Genetics and Molecular Biology Virus-based gene therapy research
Sofia Freiman, Jun Chen, Johan Flygare, Chayenne Kampman, Karin Pike‐Overzet, Alexander B. Mohseny, +6 more
1citations -
Identification of endothelial-to-mesenchymal transition gene signatures in single-cell transcriptomics of human atherosclerotic tissue2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology Atherosclerosis and Cardiovascular Diseases Open access
Lotte Slenders, Marian Wesseling, Arjan Boltjes, Daniek Kapteijn, Marie A.C. Depuydt, Koen H.M. Prange, +8 more
6citations -
Cyclically stretched ACL fibroblasts emigrating from spheroids adapt their cytoskeleton and ligament-related expression profile2021 Cell and Tissue Research article Biochemistry, Genetics and Molecular Biology Cellular Mechanics and Interactions Open access
Clemens Gögele, Christina Hoffmann, Rudolf Merkel, Silke Schwarz, Mersedeh Tohidnezhad, Bernd Hoffmann, +1 more
11citations