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Reducing Manual Annotation Costs for Cell Segmentation by Upgrading Low-Quality Annotations2023 Lecture notes in computer science conference-paper Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques
Șerban Vădineanu, Daniël M. Pelt, Oleh Dzyubachyk, Kees Joost Batenburg
3citations -
No Free Lunch in Annotation Either: An Objective Evaluation of Foundation Models for Streamlining Annotation in Animal Tracking2025 IEEE International Symposium on Biomedical Imaging (ISBI) conference-paper Computer Science Video Surveillance and Tracking Methods Open access
Emil Mededovic, Valdy Laurentius, Yuli Wu, Marcin Kopaczka, Chen Zhu, Mareike Schulz, +2 more
1citations -
No Free Lunch in Annotation either: An objective evaluation of foundation models for streamlining annotation in animal tracking2025 arXiv (Cornell University) preprint Computer Science Video Surveillance and Tracking Methods Open access
Emil Mededovic, Valdy Laurentius, Yuli Wu, Marcin Kopaczka, Chen Zhu, Mareike Schulz, +2 more
0citations -
Large Language Model Hacking: Quantifying the Hidden Risks of Using LLMs for Text Annotation2025 arXiv (Cornell University) preprint Social Sciences Computational and Text Analysis Methods Open access
Paul Röttger, Aleksandra Urman, Albert Wendsjö, Flor Miriam Plaza-del-Arco, Johannes B. Gruber, Dirk Hovy
82citations -
The Influence of Human Annotation on CNN Performance for Anomaly Detection in ICU Data2025 Current Directions in Biomedical Engineering article Computer Science Anomaly Detection Techniques and Applications Open access
Lavinia Goldermann, Simon Fonck, Lena Olivier, Sebastian Johannes Fritsch, André Stollenwerk
0citations -
TEtrimmer: a tool to automate the manual curation of transposable elements2025 Nature Communications article Biochemistry, Genetics and Molecular Biology Chromosomal and Genetic Variations Open access
Jiangzhao Qian, Hang Xue, Shujun Ou, Ludwig Mann, Jessica M. Storer, Lisa Fürtauer, +4 more
29citations -
TEtrimmer: a novel tool to automate the manual curation of transposable elements2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Chromosomal and Genetic Variations Open access
Jiangzhao Qian, Hang Xue, Shujun Ou, Jessica M. Storer, Lisa Fürtauer, Mary C. Wildermuth, +2 more
7citations -
The Influence of Human Annotation on CNN Performance for Anomaly Detection in ICU Data2025 Current Directions in Biomedical Engineering article Computer Science Anomaly Detection Techniques and Applications Open access
Lavinia Goldermann, Simon Fonck, Lena Sophie Olivier, Sebastian Johannes Fritsch, André Stollenwerk
0citations -
Reducing the Annotation Effort for Video Object Segmentation Datasets2021 IEEE Winter Conference on Applications of Computer Vision conference-paper Computer Science Advanced Neural Network Applications Open access cited by 1 patent
Paul Voigtlaender, Lishu Luo, Chun Yuan, Yong Jiang, Bastian Leibe
21citations -
A configurable software platform for creating, reviewing and adjudicating annotation of unstructured text.2022 International Journal for Population Data Science article Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Richard J Beare, Tanya Ravipati, Elizabeth Le, Taya Annabelle Collyer, Velandai K. Srikanth, Nadine E. Andrew
0citations -
SwarmMAP: swarm learning for decentralized cell type annotation in single cell sequencing data2026 npj Systems Biology and Applications article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Oliver Lester Saldanha, Vivien Goepp, Hyojin Kim, Jie Fu Zhu, Rafael Kramann, Sikander Hayat, +1 more
2citations -
SwarmMAP: Swarm Learning for Decentralized Cell Type Annotation in Single Cell Sequencing Data2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Oliver Lester Saldanha, Vivien Goepp, Hyojin Kim, Jie Ping Zhu, Rafael Kramann, Sikander Hayat, +1 more
1citations -
TextLens & LeTTuce: Automated Corpus Annotation and Multilingual Tagging as a Service2026 Language Resources and Evaluation Conference (LREC) conference-paper Computer Science Natural Language Processing Techniques Open access
Cynthia Van Hee, Jonas Doumen, Vincent Prins, Pranaydeep Singh, Vincent Vandeghinste, Els Lefever
0citations -
Cooperative AI training for cardiothoracic segmentation in computed tomography: An iterative multi-center annotation approach2024 European Journal of Radiology article Computer Science Medical Image Segmentation Techniques Open access
Bianca C Lassen-Schmidt, Bettina Baeßler, Matthias Gutberlet, Josephine Berger, Jan Michael Brendel, Andreas Michael Bucher, +17 more
4citations -
Semantic Annotation of Experimental Methods in Analytical Chemistry2022 Analytical Chemistry article Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Magnus Palmblad, Enahoro Asein, Nina P. Bergman, A. P. Ivanova, Lukas Ramasauskas, Hazzar Mohammed Reyes, +3 more
3citations