Papers matching “linked data” in Biomedical Text Mining and Ontologies 23
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Semantic modelling of Common Data Elements for Rare Disease registries, and a prototype workflow for their deployment over registry data2021 medRxiv preprint Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Rajaram Kaliyaperumal, Mark D. Wilkinson, Pablo Alarcón Moreno, Nirupama Benis, Ronald Cornet, Bruna dos Santos Vieira, +12 more
9citations -
Semantic modelling of common data elements for rare disease registries, and a prototype workflow for their deployment over registry data2022 Journal of Biomedical Semantics article Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Rajaram Kaliyaperumal, Mark D. Wilkinson, Pablo Alarcón Moreno, Nirupama Benis, Ronald Cornet, Bruna dos Santos Vieira, +13 more
48citations -
CDE-Mapper: Using Retrieval-Augmented Language Models for Linking Clinical Data Elements to Controlled Vocabularies2025 arXiv (Cornell University) preprint Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Komal Gilani, Marlo Verket, Michel J. Dumontier, Hans‐Peter Brunner‐La Rocca, Visara Urovi
0citations -
CDE-Mapper: Using retrieval-augmented language models for linking clinical data elements to controlled vocabularies2025 Computers in Biology and Medicine article Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Komal Gilani, Marlo Verket, Michel J. Dumontier, Hans‐Peter Brunner‐La Rocca, Visara Urovi
4citations -
A Simple Standard for Sharing Ontological Mappings (SSSOM)2022 Database article Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Nicolas Matentzoglu, James P. Balhoff, Susan M. Bello, Chris Bizon, Matthew Brush, Tiffany J. Callahan, +35 more
89citations -
biopragmatics/curies: v0.12.92026 Zenodo (CERN European Organization for Nuclear Research) software Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Charles Tapley Hoyt, Chris J Mungall, Jonny L. Saunders, Harshad, Nicolas Matentzoglu, Vincent Emonet
0citations -
biopragmatics/curies: v0.12.42026 Zenodo (CERN European Organization for Nuclear Research) software Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Charles Tapley Hoyt, Chris J Mungall, Jonny L. Saunders, Harshad, Nicolas Matentzoglu, Vincent Emonet
0citations -
biopragmatics/curies: v0.13.32026 Zenodo (CERN European Organization for Nuclear Research) software Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Charles Tapley Hoyt, Chris J Mungall, Jonny Saunders, Harshad, Nicolas Matentzoglu, Vincent Emonet
0citations -
biopragmatics/curies: v0.13.22026 Zenodo (CERN European Organization for Nuclear Research) software Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Charles Tapley Hoyt, Chris J Mungall, Jonny Saunders, Harshad, Nicolas Matentzoglu, Vincent Emonet
0citations -
biopragmatics/curies: v0.12.102026 Zenodo (CERN European Organization for Nuclear Research) software Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Charles Tapley Hoyt, Chris J Mungall, Jonny L. Saunders, Harshad, Nicolas Matentzoglu, Vincent Emonet
0citations -
biopragmatics/curies: v0.12.82026 Zenodo (CERN European Organization for Nuclear Research) software Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Charles Tapley Hoyt, Chris J Mungall, Jonny L. Saunders, Harshad, Nicolas Matentzoglu, Vincent Emonet
0citations -
biopragmatics/curies: v0.12.72026 Zenodo (CERN European Organization for Nuclear Research) software Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Charles Tapley Hoyt, Chris J Mungall, Jonny L. Saunders, Harshad, Nicolas Matentzoglu, Vincent Emonet
0citations -
biopragmatics/curies: v0.13.42026 Zenodo (CERN European Organization for Nuclear Research) software Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Charles Tapley Hoyt, Chris J Mungall, Jonny Saunders, Harshad, Nicolas Matentzoglu, Vincent Emonet
0citations -
biopragmatics/curies: v0.13.52026 Zenodo (CERN European Organization for Nuclear Research) software Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Charles Tapley Hoyt, Chris J Mungall, Jonny Saunders, Harshad, Nicolas Matentzoglu, Vincent Emonet
0citations -
A configurable software platform for creating, reviewing and adjudicating annotation of unstructured text.2022 International Journal for Population Data Science article Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Richard J Beare, Tanya Ravipati, Elizabeth Le, Taya Annabelle Collyer, Velandai K. Srikanth, Nadine E. Andrew
0citations -
Deep Learning-based detection of psychiatric attributes from German mental health records2022 International Journal of Medical Informatics article Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Sumit Madan, Fabian Julius Zimmer, Helena Balabin, Sebastian Schaaf, Holger Fröhlich, Juliane Fluck, +4 more
18citations -
Mondo: integrating disease terminology across communities2025 Genetics article Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Nicole Vasilevsky, Sabrina Toro, Nicolas Matentzoglu, Joseph E Flack, Kathleen R. Mullen, Harshad Hegde, +88 more
29citations -
Biomedical Entity Linking for Dutch: Fine-tuning a Self-alignment BERT Model on an Automatically Generated Wikipedia Corpus2024 Language Resources and Evaluation Conference (LREC) conference-paper Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Fons Hartendorp, Tom M Seinen, Erik M. van Mulligen, Suzan Verberne
1citations -
How do others cope? Extracting coping strategies for adverse drug events from social media2022 Journal of Biomedical Informatics article Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Anne R. Dirkson, Suzan Verberne, G. van Oortmerssen, Hans A. J. Gelderblom, Wessel Kraaij
8citations -
monarch-initiative/monarch-app: v1.25.02026 Zenodo (CERN European Organization for Nuclear Research) software Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
varun_divya, Kevin Schaper, Vincent Rubinetti, Sierra Moxon, Corey Cox, Patrick Golden, +11 more
0citations
23 results