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The genetic diversity of the soybean rust pathogen Phakopsora pachyrhizi has been driven by two major evolutionary lineages2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Yeasts and Rust Fungi Studies Open access
Vinícius Delgado da Rocha, Everton Geraldo Capote Ferreira, Fernanda Machado Castanho, Marcia Kamogae Kuwahara, Claudia Vieira Godoy, M. C. Meyer, +10 more
2citations -
Clostridioides difficile PCR ribotype 151 is polyphyletic and includes pathogenic isolates from cryptic clade C-II with mono-toxin pathogenicity loci that can escape routine diagnostics2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Clostridium difficile and Clostridium perfringens research Open access
Quinten R. Ducarmon, Tjomme van der Bruggen, Céline Harmanus, Ingrid M. J. G. Sanders, Laura G.M. Daenen, Ad C. Fluit, +4 more
1citations -
Geomorphic evolution of a Caribbean biological hotspot2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Environmental Science Coral and Marine Ecosystems Studies Open access
Aaron O’Dea, Max Titcomb, H. Luke Anderson, Brígida De Gracia, Suzette G. A. Flantua, Michael G. Hynes, +2 more
0citations -
A novel bacteriophage with broad host-range against Clostridioides difficile ribotype 078 elucidates the phage receptor2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Environmental Science Bacteriophages and microbial interactions Open access
Michaella J. Whittle, Terry W. Bilverstone, R. J. van Esveld, Arlen-Celina Lücke, Michelle M. Lister, Sarah A. Kuehne, +1 more
0citations -
Single cell RNA sequence analysis of human bone marrow samples reveals new targets for isolation of skeletal stem cells using DNA-coated gold nanoparticles2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Mesenchymal stem cell research Open access
Elloise Matthews, Stuart Lanham, Maria Eleni Kyriazi, Konstantina Alexaki, Afaf Helmy El-Sagheer, Tom Brown, +5 more
3citations -
Genome Analyses of A Worldwide Multisource Collection of Klebsiella variicola Reveal Adaptation Relevant for Human Infection2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Antibiotic Resistance in Bacteria Open access
Jiayu Wang, Claudia E. Coipan, Eelco Franz, Ed J Kuiper, Els Wessels, David L. Gally, +7 more
0citations -
A fungal plant pathogen overcomes mlo -mediated broad-spectrum disease resistance by rapid gene loss2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Powdery Mildew Fungal Diseases Open access
Stefan Kusch, Lamprinos Frantzeskakis, Birthe D. Lassen, Florian Kümmel, Lina Pesch, Mirna Barsoum, +2 more
2citations -
Heme is crucial for medium-dependent metronidazole resistance in clinical isolates of C. difficile2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Clostridium difficile and Clostridium perfringens research Open access
Ilse M. Boekhoud, Igor A. Sidorov, Sam Nooij, Céline Harmanus, Ingrid M. J. G. Bos-Sanders, Virginie F. Viprey, +6 more
2citations -
A pbpB1 mutation causing β-lactam resistance in clinical Listeria monocytogenes isolates2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Antibiotic Resistance in Bacteria Open access
Sabrina Wamp, Franziska Schuler, Alexander Krüttgen, Antje Flieger, Sven Halbedel
1citations -
Genetic diversity of the pathogenic banana Fusarium wilt in northern Viet Nam2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Banana Cultivation and Research Open access
Loan Le Thi, Arne Mertens, Dang Toan Vu, Dang Tuong Vu, Pham Le Anh Minh, Huy Nguyen Duc, +9 more
1citations -
Metagenomic global survey and in-depth genomic analyses of Ruminococcus gnavus reveal differences across host lifestyle and health status2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access
Sam Nooij, Niels Plomp, Ingrid M. J. G. Sanders, L. Schout, Andrea E. van der Meulen‐de Jong, Elisabeth M. Terveer, +11 more
0citations -
A host shift as the origin of tomato bacterial canker caused by Clavibacter michiganensis2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Plant Pathogenic Bacteria Studies Open access
Alan G. Yañez-Olvera, Ambar Grissel Gómez-Díaz, Nelly Selem Mojica, Lorena Rodríguez-Orduña, José Pablo Lara-Ávila, Vanina Varni, +4 more
0citations -
Repeat ablation strategies in atrial fibrillation patients with durably isolated pulmonary veins: insights on real-world practices from the Netherlands Heart Registration
Federico Tancredi Magni, Michelle Samuel, Bart A. Mulder, Michelle Van Der Stoel, Rutger J. Hassink, Serge A.I.P. Trines, +6 more
0citations -
An optimized workflow for analyzing extracellular vesicles as biomarkers in liver diseases2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Extracellular vesicles in disease Open access
Martha Paluschinski, Sven Heiko Loosen, Claus Kordes, Verena Keitel, Anne Kuebart, Timo Brandenburger, +5 more
0citations -
Broad diversity of human gut bacteria accessible via a traceable strain deposition system2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access
Thomas C. A. Hitch, Johannes M. Masson, Charlie Pauvert, Selina Nüchtern, Nicole Simone Treichel, Marko Baloh, +28 more
13citations -
Enhanced cultured diversity of the mouse gut microbiota enables custom-made synthetic communities2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access
Afrizal Afrizal, Susan A. V. Jennings, Thomas C. A. Hitch, Marijana Basic, Atscharah Panyot, Nicole Simone Treichel, +18 more
9citations -
The paradoxical relationship between CRISPR-Cas and phage susceptibility in Pseudomonas aeruginosa2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology CRISPR and Genetic Engineering Open access
Cédric Lood, Emma Verkinderen, Aleksandra Petrović Fabijan, Jonathan R. Iredell, Pieter‐Jan Ceyssens, Rob Lavigne, +1 more
2citations -
Ecology of prophage-like elements in Bacillus subtilis at global and local geographical scale2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Environmental Science Bacteriophages and microbial interactions Open access
Polonca Štefanič, Eva Stare, Valentina A. Floccari, Jasna Kovač, Robert Hertel, Ulisses Nunes da Rocha, +4 more
1citations -
A novel sialic acid-binding adhesin present in multiple species contributes to the pathogenesis of Infective endocarditis2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Infective Endocarditis Diagnosis and Management Open access
Meztlli O. Gaytán, Anirudh K. Singh, Shireen A. Woodiga, Surina A. Patel, Seon‐Sook An, Arturo Vera‐Ponce de León, +8 more
0citations -
Colletotrichum spp. from soybean cause disease on lupin but can also induce plant growth-promoting effects2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Plant Pathogens and Fungal Diseases Open access
Louisa Wirtz, Nelson Sidnei Massola Júnior, Renata Rebellato Linhares de Castro, Brigitte Ruge‐Wehling, Ulrich Schaffrath, Marco Loehrer
0citations -
Increase of Clostridioides difficile PCR ribotype 002 infection coincides with decreased disease severity in hospitalized patients in the Netherlands2024 medRxiv preprint Medicine Clostridium difficile and Clostridium perfringens research Open access
Amoe Baktash, Céline Harmanus, Jelle J. Goeman, Wendy Brennan, Martin Cormican, Jeroen Corver, +2 more
0citations -
Characterization of widely conserved novel pigment production in Bacillus subtilis species2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Microbial Natural Products and Biosynthesis Open access
Rune Overlund Stannius, Christopher A. Dunlap, Estelle Morvan, Mélanie Berbon, Sophie Lecomte, Antoine Loquet, +1 more
0citations -
Carriage of three plasmids in a single human clinical isolate of Clostridioides difficile2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Clostridium difficile and Clostridium perfringens research Open access
Anna M. Roseboom, Quinten R. Ducarmon, Bastian Volker Helmut Hornung, Céline Harmanus, Monique J. T. Crobach, Ed J. Kuijper, +3 more
0citations