Papers matching “intercellular communication” 104
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P020 Mapping the changing intercellular communication and its downstream effect in Ulcerative Colitis2021 Journal of Crohn s and Colitis conference-abstract Biochemistry, Genetics and Molecular Biology Inflammatory Bowel Disease Open access
Lejla Potari-Gul, Dezső Módos, Dénes Türei, Alberto Valdeolivas, Matthew Madgwick, Julio Sáez-Rodríguez, +1 more
0citations -
Beta-Cell-Derived Extracellular Vesicles: Mediators of Intercellular Communication in the Islet Microenvironment in Type 1 Diabetes2024 Cells article Biochemistry, Genetics and Molecular Biology Extracellular vesicles in disease Open access
Mette C. Dekkers, Xudong Pu, Agustin Enciso‐Martinez, Arnaud Zaldumbide
12citations -
Advances and challenges in cell–cell communication inference: a comprehensive review of tools, resources, and future directions2025 Briefings in Bioinformatics article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Giulia Cesaro, James Shiniti Nagai, Nicolò Gnoato, Alice Chiodi, Gaia Tussardi, Vanessa Klöker, +6 more
38citations -
Comparison of Resources and Methods to infer Cell-Cell Communication from Single-cell RNA Data2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Daniel Dimitrov, Dénes Türei, Charlotte Boys, James Shiniti Nagai, Ricardo O. Ramirez Flores, Hyojin Kim, +5 more
23citations -
Comparison of methods and resources for cell-cell communication inference from single-cell RNA-Seq data2022 Nature Communications article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access cited by 1 patent
Daniel Dimitrov, Dénes Türei, Martín Garrido‐Rodríguez, Paul L Burmedi, James Shiniti Nagai, Charlotte Boys, +7 more
670citations -
Cell-cell Communication Inference from Single-cell RNA-Seq Data: a Comparison of Methods and Resources2021 Research Square preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Daniel Dimitrov, Dénes Türei, Charlotte Boys, James Shiniti Nagai, Ricardo Ramirez Flores, Hyojin Kim, +5 more
3citations -
scACCorDiON: a clustering approach for explainable patient level cell–cell communication graph analysis2025 Bioinformatics article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
James Shiniti Nagai, Tiago Maié, Michael T. Schaub, Ivan G. Costa
3citations -
Pathway-centric visualization of cell-cell communication in single-cell transcriptomics data2026 npj Systems Biology and Applications article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Sidrah Maryam, Martin Manolov, Rafael Kramann, Sikander Hayat
0citations -
GraphComm: A Graph-based Deep Learning Method to Predict Cell-Cell Communication in single-cell RNAseq data2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Emily So, Sikander Hayat, Sisira Kadambat Nair, Bo Wang, Benjamin Haibe‐Kains
13citations -
Illuminating cellular and extracellular vesicle-mediated communication via a split-Nanoluc reporter in vitro and in vivo2023 Cell Reports Methods article Biochemistry, Genetics and Molecular Biology Extracellular vesicles in disease Open access
Thomas S. van Solinge, Shadi Mahjoum, Stefano Ughetto, Alessandro Sammarco, Marike L. D. Broekman, Xandra O. Breakefield, +1 more
6citations -
Integrated intra‐ and intercellular signaling knowledge for multicellular omics analysis2021 Molecular Systems Biology article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Dénes Türei, Alberto Valdeolivas, Lejla Gul, Nicolàs Palacio‐Escat, Michal Klein, Olga Ivanova, +6 more
406citations -
Integrated intra- and intercellular signaling knowledge for multicellular omics analysis2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Dénes Türei, Alberto Valdeolivas, Lejla Gul, Nicolàs Palacio‐Escat, Olga Ivanova, Attila Gábor, +3 more
36citations -
GraphComm predicts cell cell communication using a graph based deep learning method in single cell RNA sequencing data2025 Scientific Reports article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Emily So, Sikander Hayat, Sisira Kadambat Nair, Bo Wang, Benjamin Haibe‐Kains
6citations -
Explainable multi-view framework for dissecting intercellular signaling from highly multiplexed spatial data2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Jovan Tanevski, Ricardo O. Ramirez Flores, Attila Gábor, Denis Schapiro, Julio Sáez-Rodríguez
28citations -
Extracellular Vesicle-Mediated Bilateral Communication between Glioblastoma and Astrocytes2020 Trends in Neurosciences review Biochemistry, Genetics and Molecular Biology Extracellular vesicles in disease Open access
Lisa Nieland, Liza M. Morsett, Marike L. D. Broekman, Xandra Owens Breakefield, Erik R. Abels
79citations -
Explainable multi-view framework for dissecting intercellular signaling from highly multiplexed spatial data2021 Research Square preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Jovan Tanevski, Attila Gábor, Ricardo Ramirez Flores, Denis Schapiro, Julio Sáez-Rodríguez
10citations -
Microglial and neuronal communication via exosomes under inflammatory conditions2025 Annals of Anatomy - Anatomischer Anzeiger article Biochemistry, Genetics and Molecular Biology Extracellular vesicles in disease Open access
Robin Maurice Semrau, Miriam Scheld, J Meier, Nima Sanadgol, Natalie Tillmann, Cordian Beyer, +2 more
0citations -
Living Proof of Activity of Extracellular Vesicles in the Central Nervous System2021 International Journal of Molecular Sciences article Biochemistry, Genetics and Molecular Biology Extracellular vesicles in disease Open access
Shadi Mahjoum, David Rufino‐Ramos, Luís Pereira de Almeida, Marike L. D. Broekman, Xandra O. Breakefield, Thomas S. van Solinge
15citations -
Role of extracellular vesicle-carried ncRNAs in the interactive ‘dialogue’ within the brain and beyond: emerging theranostic epigenetic modifiers in brain-derived nanoplatforms2025 Translational Neurodegeneration article Biochemistry, Genetics and Molecular Biology Extracellular vesicles in disease Open access
Nima Sanadgol, Pegah Mousavi, Fatemeh Sadri, Clara Voelz, Miriam Scheld, Roghayeh Khalseh, +5 more
9citations