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SysQuan: repurposing SILAC mice for the affordable absolute quantitation of the human proteome2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Chemistry Advanced Proteomics Techniques and Applications
Yassene Mohammed, Vincent R. Richard, M. Immanuel Reyes Madlangsakay, Ying Lao, Victor Spicer, Claudia Gaither, +4 more
0citations -
Proteome modulation by opposite inotropic drugs in human engineered cardiac tissue revealed by topology-driven cross-modal integration2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Chemistry Advanced Proteomics Techniques and Applications Open access
Doroteya K. Staykova, Danique Snippert, Hans J. C. T. Wessels, R. C. Passier, Federica Conte
0citations -
Beyond the classical plasma secretome: genetic architecture and disease associations of the expanded human plasma proteome in 13,445 Europeans2026 medRxiv preprint Biochemistry, Genetics and Molecular Biology Genetic Associations and Epidemiology Open access
Solène Cadiou, Eva König, Alessia Mapelli, Giulia Pontali, Dariush Ghasemi-Semeskandeh, Michele Filosi, +34 more
0citations -
Proteomics reveals unique identities of human TGF-β-induced and thymus-derived CD4 + regulatory T cells2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology T-cell and B-cell Immunology Open access
Mark Mensink, Ellen Schrama, Eloy Cuadrado, Maartje van den Biggelaar, Derk Amsen, Sander de Kivit, +1 more
1citations -
Latent plasticity of the human pancreas across development, health, and disease2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Pancreatic function and diabetes Open access
Elisabetta Mereu, Diego Balboa, Johannes Liebig, A. Herrero, Anna Martinez Casals, Mariya Mardamshina, +37 more
5citations -
Survey of the human proteostasis network: the ubiquitin-proteasome system2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Ubiquitin and proteasome pathways Open access
Suzanne Elsasser, Evan T. Powers, Thomas Stoeger, Xiaojing Sui, Roy Kurtzbard, Patricia Martínez-Botía, +14 more
6citations -
APOE genotypes differentially remodel the astrocytic lipid droplet-associated proteome to shape lipid droplet dynamics2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Lipid metabolism and biosynthesis Open access
Carla Cuní‐López, Jessica T. Root, Ying Hao, Isabelle Kowal, Niek Blomberg, Rodolfo Ghirlando, +7 more
7citations -
Proteomics of human cancer-associated T cells identifies regulators of T cell functionality2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Cancer Immunotherapy and Biomarkers Open access
Kaspar Bresser, Žan Hozjan, Nila H. Servaas, Suzan Stelloo, Cornelia G. Spruijt, Maia Nestor Martin, +16 more
0citations -
PCSK9 affects expression of key surface proteins in human pancreatic beta cells through intra- and extracellular regulatory circuits2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Pancreatic function and diabetes Open access
Kevin Saitoski, Maria Ryaboshapkina, Ghaith M. Hamza, Andrew F. Jarnuczak, Claire Berthault, Françoise Carlotti, +7 more
1citations -
Capture of Post-Pluripotency Human Neuromesodermal and Neural Tube Axial Stem Cell States2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Pluripotent Stem Cells Research Open access
Dolunay Kelle, Enes Ugur, Ejona Rusha, Dmitry Shaposhnikov, Alessandra Livigni, Sandra Horschitz, +16 more
4citations -
Spatial multi-omics reveals targetable immunosuppressive macrophage T-cell interactions in human AML bone marrow2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Acute Myeloid Leukemia Research Open access
Merel van der Meulen, Emma S. Pool, Alicia Perzolli, Joost B. Koedijk, Eva M. Argiro, Li‐Ting Chen, +18 more
0citations -
Secretome analysis of human and rat pancreatic islets co-cultured with adipose-derived stromal cells reveals a signature with enhanced regenerative capacities2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Pancreatic function and diabetes Open access
Erika Pinheiro-Machado, Bart J. de Haan, Marten A. Engelse, Alexandra M. Smink
0citations -
Investigating Enzyme Function by Geometric Matching of Catalytic Motifs2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Protein Structure and Dynamics Open access
Ioannis G. Riziotis, Martin F. Larralde, António J. M. Ribeiro, Georg Zeller, Janet M. Thornton
2citations -
Multiomics Analyses Reveal Dynamic Bioenergetic Pathways and Functional Remodeling of the Heart During Intermittent Fasting2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Dietary Effects on Health Open access
Thiruma Valavan Arumugam, Asfa Alli Shaik, Elisa Anamaria Liehn, Sharmelee Selvaraji, Luting Poh, Vismitha Rajeev, +19 more
2citations -
Archaeological preservation of amelogenesis pathways2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Forensic and Genetic Research Open access
Ragnheiður Diljá Ásmundsdóttir, Gaudry Troché, Jesper Velgaard Olsen, Marina Martínez de Pinillos, María Martinón‐Torres, Sarah A. Schrader, +1 more
1citations -
Coding and regulatory variants affect serum protein levels and common disease2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genetic Associations and Epidemiology Open access
Valur Emilsson, Valborg Guðmundsdóttir, Alexander Guðjónsson, Mohd Anisul Karim, Marjan Ilkov, James R. Staley, +9 more
9citations -
Functional characterisation of rare variants in genes encoding the MAPK/ERK signalling pathway identified in long-lived Leiden Longevity Study participants2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genetics, Aging, and Longevity in Model Organisms Open access
Helena M. Hinterding, Maarouf Baghdadi, Thies Gehrmann, Pasquale C. Putter, Mara Neuerburg, Nico Lakenberg, +4 more
0citations -
The proteomic landscape of proteotoxic stress in a fibrogenic liver disease2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Chemistry Advanced Proteomics Techniques and Applications Open access
Florian A. Rosenberger, Sophia Clara Mädler, Katrine Holtz Thorhauge, Sophia Steigerwald, Malin Fromme, Caroline A M Weiss, +13 more
2citations -
Intracellular Proteomics and Extracellular Vesiculomics as a Metric of Disease Recapitulation in 3D Bioprinted Aortic Valve Arrays2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Engineering 3D Printing in Biomedical Research Open access
Cassandra L. Clift, Mark C. Blaser, Willem Gerrits, Mandy E. Turner, Abhijeet R. Sonawane, Tan Pham, +12 more
0citations -
Deep Visual Proteomics links vascular smooth muscle cell phenotypes to atherosclerotic plaque stability2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology Atherosclerosis and Cardiovascular Diseases Open access
Elena Kratz, Ankit Sinha, Trusha Adeshara, Valentina Paloschi, Nadja Sachs, Jessica Pauli, +10 more
0citations -
A systems approach reveals species differences in hepatic stress response capacity2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Pharmacology, Toxicology and Pharmaceutics Drug-Induced Hepatotoxicity and Protection Open access
Giusy Russomanno, Rowena L. C. Sison-Young, Lucia A Livoti, Hannah Coghlan, Rosalind E. Jenkins, Steven J. Kunnen, +14 more
1citations