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TMAO and its precursors in relation to host genetics, gut microbial composition, diet, and clinical outcomes: Meta-analysis of 5 prospective population-based cohorts2022 medRxiv preprint Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access
Sergio Andreu‐Sánchez, Shahzad Ahmad, Alexander Kurilshikov, Marian Beekman, Mohsen Ghanbari, Martijn H. J. R. van Faassen, +17 more
2citations -
Transcriptional response to host chemical cues underpins expansion of host range in a fungal plant pathogen lineage2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Plant pathogens and resistance mechanisms Open access
Stefan Kusch, Justine Larrouy, Heba M. M. Ibrahim, Noémie Gasset, Olivier Navaud, Malick Mbengué, +4 more
1citations -
Identification of kinase inhibitors as potential host-directed therapies for intracellular bacteria2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bacterial Genetics and Biotechnology Open access
Robin H. G. A. van den Biggelaar, Kimberley V. Walburg, Susan J. F. van den Eeden, Cassandra L. R. van Doorn, Eugenia Meiler, Alex S. de Ries, +4 more
3citations -
Genome-wide screen identifies host loci that modulate M. tuberculosis fitness in immunodivergent mice2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Tuberculosis Research and Epidemiology Open access
Rachel Katherine Meade, Jarukit Edward Long, Adrián Jinich, Kyu Young Rhee, David George Ashbrook, Robert Warren Williams, +2 more
0citations -
Clade V MLO proteins are bona fide host susceptibility factors required for powdery mildew pathogenesis in Arabidopsis2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Powdery Mildew Fungal Diseases Open access
David Bloodgood, Qiong Zhang, Ying Wu, Ralph Panstruga, Sharon A. Kessler, Libo Shan, +1 more
0citations -
Endogenous RALF peptide function is required for powdery mildew host colonization2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Powdery Mildew Fungal Diseases Open access
Henriette Leicher, Sebastian D. Schade, Jan Hübbers, Kristina S. Munzert‐Eberlein, Genc Haljiti, Christina Ludwig, +6 more
7citations -
A host shift as the origin of tomato bacterial canker caused by Clavibacter michiganensis2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Plant Pathogenic Bacteria Studies Open access
Alan G. Yañez-Olvera, Ambar Grissel Gómez-Díaz, Nelly Selem Mojica, Lorena Rodríguez-Orduña, José Pablo Lara-Ávila, Vanina Varni, +4 more
0citations -
Pneumolysin-dependent and independent non-canonical autophagy processes mediate host defense against pneumococcal infection2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Autophagy in Disease and Therapy Open access
Bartosz J. Michno, Niedharsan Pooranachandran, THEOBALD SMITH, Erin Faught, Sandra Lipowská, Andrew K. Fenton, +2 more
0citations -
The soybean rust pathogen Phakopsora pachyrhizi displays transposable element proliferation that correlates with broad host-range adaptation on legumes2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Chromosomal and Genetic Variations Open access
Yogesh Kumar Gupta, Francismar Corrêa Marcelino‐Guimarães, Cécile Lorrain, Andrew D Farmer, Sajeet Haridas, Everton Geraldo Capote Ferreira, +49 more
4citations -
Host-dependent resistance of Group A Streptococcus to sulfamethoxazole mediated by a horizontally-acquired ECF transporter S component2022 Research Square preprint Biochemistry, Genetics and Molecular Biology Antibiotic Resistance in Bacteria Open access
M. Kalindu D. Rodrigo, Aarti Saiganesh, Andrew James Hayes, Jack Anstey, Jua Iwasaki, Janessa L. Pickering, +12 more
1citations -
A new class of protein sensor links spirochete pleomorphism, persistence, and chemotaxis2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bacterial Genetics and Biotechnology Open access
Alise R. Muok, Kurni Kurniyati, Davi R. Ortega, F.A. Olsthoorn, Adam Sidi Mabrouk, Chunhao Li, +1 more
1citations -
Serotonin modulation of metabolism and stress response in Pseudomonas fluorescens2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bacterial Genetics and Biotechnology
Barbora Waclawiková, Markus Schwalbe, Diana Ilyaskina, Semih Toptas, Nicola U. Thome, Somayah S. Elsayed, +3 more
0citations -
Parallel genetic adaptation of Bacillus subtilis to different plant species2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Plant-Microbe Interactions and Immunity Open access
Guohai Hu, Yue Wang, Christopher Blake, Mathilde Nordgaard, Xin Liu, Bo Wang, +1 more
2citations -
Lineage-specific microbial protein prediction enables large-scale exploration of protein ecology within the human gut2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Matthias A. Schmitz, Nicholas J Dimonaco, Thomas Clavel, Thomas C. A. Hitch
1citations -
Hepatitis C virus cell culture adaptive mutations enhance cell culture propagation by multiple mechanisms but boost antiviral responses in primary human hepatocytes2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Hepatitis C virus research Open access
Nicola Frericks, Richard J. P. Brown, Birthe M. Reinecke, Maike Herrmann, Yannick Brüggemann, Daniel Tödt, +5 more
1citations -
The role of bacterial size, shape and surface in macrophage engulfment of uropathogenic E. coli cells2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Escherichia coli research studies Open access
Elizabeth Peterson, Bill Söderström, Nienke M. Prins, Giang H.B. Le, Lauren E. Hartley‐Tassell, Christian R. Evenhuis, +8 more
0citations -
Fluoroquinolone-Triggered Prophage Induction in Streptococcus anginosus Reveals Lytic Cycle, CRISPR–Prophage Interplay, and the potential for Cross-Species Horizontal Gene Transfer2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Environmental Science Bacteriophages and microbial interactions Open access
Dorina Haider, Salome Barbakadze, Julia P. Mosler, Stefanie Mauerer, Clarissa Read, Parham Sendi, +2 more
0citations -
Genome Analyses of A Worldwide Multisource Collection of Klebsiella variicola Reveal Adaptation Relevant for Human Infection2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Antibiotic Resistance in Bacteria Open access
Jiayu Wang, Claudia E. Coipan, Eelco Franz, Ed J Kuiper, Els Wessels, David L. Gally, +7 more
0citations -
A novel toxin-antitoxin module SlvT–SlvA governs megaplasmid stability and incites solvent tolerance in Pseudomonas putida S122020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bacterial Genetics and Biotechnology Open access
Hadiastri Kusumawardhani, David van Dijk, Rohola Hosseini, Johannes H. DE WINDE
0citations -
Global diversity of soil-transmitted helminths reveals population-biased genetic variation that impacts diagnostic targets2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology Parasites and Host Interactions Open access
Marina Papaiakovou, Andrea Waeschenbach, Olumide Ajibola, Sitara Swarna Rao Ajjampur, Roy Malcolm Anderson, Robin L. Bailey, +38 more
2citations -
Eukaryotic catecholamine hormones influence the chemotactic control of Vibrio campbellii by binding to the coupling protein CheW2021 ChemRxiv preprint Biochemistry, Genetics and Molecular Biology Bacterial Genetics and Biotechnology Open access
Angela Weigert Muñoz, Elisabeth A. Hoyer, Kilian Schumacher, Marianne Grognot, Katja M. Taute, Stephan M. Hacker, +2 more
2citations -
Comparative analysis reveals the modular functional build-up of megaplasmid pTTS12 of Pseudomonas putida S12: a paradigm for transferable traits, plasmid stability and inheritance?2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bacterial Genetics and Biotechnology Open access
Hadiastri Kusumawardhani, Rohola Hosseini, Johannes H. DE WINDE
1citations -
Eukaryotic catecholamine hormones influence the chemotactic control of Vibrio campbellii by binding to the coupling protein CheW2021 preprint Biochemistry, Genetics and Molecular Biology Bacterial Genetics and Biotechnology Open access
Angela Weigert Muñoz, Elisabeth A. Hoyer, Kilian Schumacher, Marianne Grognot, Katja M. Taute, Stephan M. Hacker, +2 more
0citations