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Chemoenzymatic labeling of DNA methylation patterns for single-molecule epigenetic mapping2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Epigenetics and DNA Methylation Open access
Tslil Gabrieli, Yael Michaeli, Sigal Avraham, Dmitry Torchinsky, Matyas Juhasz, Ceyda Çoruh, +5 more
7citations -
Rational Design of a Photoactivated Fluorescent Probe for Thiol-ene Mediated Protein Labelling2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Chemistry Click Chemistry and Applications Open access
Ben H McLoughlin, Conor Williams, Sean M. McKenna, Kosta Besermenji, Ivana Drienovská, Marinda Westerveld, +6 more
0citations -
Practical observations on the use of fluorescent reporter systems in C. difficile2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Advanced Fluorescence Microscopy Techniques Open access
Ana M. Oliveira Paiva, Annemieke H. Friggen, Roxanne Douwes, Bert Wittekoek, Wiep Klaas Smits
1citations -
Characterization of fluorescent proteins with intramolecular photostabilization2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Advanced Fluorescence Microscopy Techniques Open access
Sarah S. Henrikus, Lei Zhang, Jasper H. M. van der Velde, Christian Gebhardt, Gregor Jung, Thorben Cordes
3citations -
Simultaneous global labeling (SiGL) of 5-methylcytosine and 5-hydroxymethylcytosine by DNA alkylation with a synthetic cofactor and engineered methyltransferase2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Epigenetics and DNA Methylation Open access
Sigal Avraham, Leonie Schütz, Larissa Käver, Andreas Dankers, Sapir Margalit, Yael Michaeli, +8 more
1citations -
Fast and efficient generation of knock-in human organoids using homology-independent CRISPR/Cas9 precision genome editing2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology CRISPR and Genetic Engineering Open access cited by 15 patents
Benedetta Artegiani, Delilah F. G. Hendriks, Joep Beumer, Rutger N.U. Kok, Xuan Zheng, Indi P. Joore, +4 more
29citations -
Multi-scale Assessment of Brain Blood Volume and Perfusion in the APP/PS1 Mouse Model of Amyloidosis2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Alzheimer's disease research and treatments Open access
Leon P. Munting, Marc P. P. Derieppe, Lenard M. Voortman, Artem Khmelinskii, Ernst Suidgeest, Lydiane Hirschler, +3 more
2citations -
Spatially resolved mapping of monoacylglycerol lipase activity in the brain2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Cannabis and Cannabinoid Research Open access
Daan van der Vliet, Alex X.Y. Klinkenberg, Rik Platte, Kieran P. Higgins, Susanne Prokop, Mirjam C. W. Huizenga, +8 more
0citations -
Multiview Deconvolution Two-photon Laser Scanning Microscopy2020 Research Square preprint Biochemistry, Genetics and Molecular Biology Advanced Fluorescence Microscopy Techniques Open access
Dimitrios Kapsokalyvas, Rodrigo A. Rosas, Rob W. A. Janssen, Jo M. Vanoevelen, Martin Strauch, Dorit Merhof, +2 more
0citations -
Multifocal two-photon excitation fluorescence microscopy reveals hop diffusion of H-Ras membrane anchors in epidermal cells of zebrafish embryos2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Advanced Fluorescence Microscopy Techniques Open access
Radoslaw J. Gora, Redmar C. Vlieg, Sven Jonkers, John van Noort, Marcel J. M. Schaaf
0citations -
QUAS-R: Glutamine (Q) Uptake Assay with Single cell Resolution reveals metabolic heterogeneity with immune populations2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Amino Acid Enzymes and Metabolism Open access
Leonard R. Pelgrom, Simon O’Shoughnessy, Sander van Kasteren, David K. Finlay, Linda V. Sinclair
5citations -
Therapeutic efficacy of hiMSC-derived Extracellular Vesicles from Serum-containing and Xeno-free media for osteoarthritis treatment2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Osteoarthritis Treatment and Mechanisms Open access
Sayedeh Sana Sayedipour, Jelle Nikkels, Tobias Tertel, Matilde Balbi, Georgina Shaw, Luis Javier Cruz, +5 more
1citations -
Analysis of the H-Ras mobility pattern in vivo shows cellular heterogeneity inside epidermal tissue2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Advanced Fluorescence Microscopy Techniques Open access
Radoslaw J. Gora, Babette de Jong, Patrick van Hage, Mary Ann Rhiemus, Fjodor van Steenis, John van Noort, +2 more
1citations -
Investigating T cell Recruitment in Atherosclerosis using a novel Human 3D Tissue-Culture Model reveals the role of CXCL12 in intraplaque neovessels2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology Atherosclerosis and Cardiovascular Diseases Open access
Laura Parma, Nadja Sachs, Zhaolong Adrian Li, Nikola Sobczak, Bram Slütter, Lars Mäegdefessel, +3 more
1citations -
Trifunctional linkers enable improved visualization of actin by expansion microscopy2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Advanced Fluorescence Microscopy Techniques Open access
Gang Wen, Matthew Domenic Lycas, Yuqing Jia, Volker Leen, Markus Sauer, Johan Hofkens
1citations -
An optimized workflow for analyzing extracellular vesicles as biomarkers in liver diseases2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Extracellular vesicles in disease Open access
Martha Paluschinski, Sven Heiko Loosen, Claus Kordes, Verena Keitel, Anne Kuebart, Timo Brandenburger, +5 more
0citations -
A facile method to determine the molar mass of soft nanoparticles2023 Research Square preprint Biochemistry, Genetics and Molecular Biology Advanced Fluorescence Microscopy Techniques Open access
Schmidt Thomas, Becker Moritz, Grabowski Frédéric, Andreas Jupke, Pich Andrij, Wöll Dominik
0citations -
The human pathogen Mycobacterium tuberculosis and the fish pathogen Mycobacterium marinum trigger the same core set of late innate immune response genes in zebrafish larvae2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Tuberculosis Research and Epidemiology Open access
Ron P. Dirks, Anita Ordas, Susanne A. Jong-Raadsen, Sebastiaan A. Brittijn, Mariëlle C. Haks, Christiaan V. Henkel, +8 more
2citations -
Advancing Therapeutic Solutions: Poloxamer-based Thermosensitive Injectable Hydrogels containing a Self-assembling Peptide for In situ Gelation in an Osteoarthritis Murine Model2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Hydrogels: synthesis, properties, applications Open access
Sayedeh Sana Sayedipour, Timo Schomann, Sanne M. van de Looij, Somayeh Rezaie, Y.F. Ramos, Tina Vermonden, +3 more
1citations -
Minimally Invasive DNA-Mediated Photostabilization for Extended Single-Molecule and Super-resolution Imaging2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Advanced Fluorescence Microscopy Techniques Open access
Michael Scheckenbach, Cindy M. Close, Julian Bauer, Lennart Grabenhorst, Fiona Cole, Jens Koehler, +7 more
1citations -
microbeSEG: A deep learning software tool with OMERO data management for efficient and accurate cell segmentation2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access
Tim Scherr, Johannes Seiffarth, Bastian Wollenhaupt, Oliver Neumann, Marcel P. Schilling, Dietrich Kohlheyer, +3 more
1citations