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WALDO: community-Wide Annotation of γδ Lymphocytes in single-cell Data, Openly benchmarked2026 Zenodo (CERN European Organization for Nuclear Research) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Farid Keramati, Moosa Rezwani, Likai Tan, David Hamilton, Zheng Song, Tao Yang, +10 more
0citations -
MACA: Marker-based automatic cell-type annotation for single cell expression data2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Yang Xu, Simon J. Baumgart, Christian M. Stegmann, Sikander Hayat
2citations -
UnitRefine: A Community Toolbox for Automated Spike Sorting Curation2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Neuroscience Neuroscience and Neural Engineering Open access
Anoushka Jain, Chris Halcrow, Alexander Kleinjohann, Federico Spurio, Severin Graff, Jüergen Gall, +3 more
5citations -
Evaluation of SURUS: a Named Entity Recognition System to Extract Knowledge from Interventional Study Records2024 medRxiv preprint Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Casper Peeters, Koen Vijverberg, Marianne G. Pouwer, Bart A. Westerman, Maikel Boot, Suzan Verberne
1citations -
Measuring the practice of shared-decision making (OPTION12): An Investigation into Open-sourced Smaller LLMs (OS-sLLMs) for Better Privacy and Sustainability2026 arXiv (Cornell University) preprint Medicine Artificial Intelligence in Healthcare and Education Open access
Tamara Wit, Lifeng Han, Carly S. Heipon, David Lindevelt, Anne Stiggelbout, Suzan Verberne
0citations -
Integrative learning of disentangled representations from single-cell RNA-sequencing datasets2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Claudio Novella-Rausell, Dorien J.M. Peters, Ahmed Essam Mahfouz
0citations -
Analysis of the 2024 BraTS Meningioma Radiotherapy Planning Automated Segmentation Challenge2024 arXiv (Cornell University) preprint Neuroscience Brain Tumor Detection and Classification Open access
Dominic LaBella, Adrià Casamitjana, Behrus Puladi, Katherine M. Schumacher, Michael D. Mix, Kevin Leu, +54 more
7citations -
FLAG-X: Hybrid machine learning workflows for automated gating of clinical flow cytometry data2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access
Paul Martini, Marziyeh Mohammadi, Michael Christoph Thrun, David B. Blumenthal, Stefan W. Krause
0citations -
End-To-End Clinical Trial Matching with Large Language Models2024 arXiv (Cornell University) preprint Medicine Artificial Intelligence in Healthcare and Education Open access
Dyke Ferber, Lars Hilgers, Isabella C. Wiest, Marie-Elisabeth Leßmann, Jan Clusmann, Peter Neidlinger, +10 more
13citations
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