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PILOT-GM-VAE: Patient-Level Analysis of single cell Disease Atlas with Optimal Transport of Gaussian Mixture Variational Autoencoders2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Mehdi Joodaki, Mina Shaigan, James Shiniti Nagai, Tiago Maié, Christoph Kuppe, Ivan G. Costa
0citations -
Continual Learning in Medical Image Analysis: A Comprehensive Review of Recent Advancements and Future Prospects2023 arXiv (Cornell University) preprint Computer Science Domain Adaptation and Few-Shot Learning Open access
Pratibha Kumari, Joohi Chauhan, Afshin Bozorgpour, Reza Azad, Dorit Merhof
2citations -
RGT: a toolbox for the integrative analysis of high throughput regulatory genomics data2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genomics and Chromatin Dynamics Open access
Zhijian Li, Chao‐Chung Kuo, Fabio Ticconi, Mina Shaigan, Eduardo Gade Gusmao, Manuel Allhoff, +3 more
2citations -
Searchlight Optimization Using Representational Similarity Analysis for Subject-Level Voxel Selection in Emotional State Decoding2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Neuroscience Functional Brain Connectivity Studies Open access
Xuelei Wang, Jana Zweerings, Michael Lührs, Fengyu Cong, Klaus Mathiak, David E.J. Linden, +3 more
0citations -
The NLRP1 inflammasome emerges as a promising therapeutic target and prognostic biomarker across multiple cancer types: A comprehensive pan-cancer analysis2024 Research Square preprint Biochemistry, Genetics and Molecular Biology Inflammasome and immune disorders Open access
Leila Habibipour, Mahboubeh Sadeghi, Alireza Raghibi, Amirhossein Mohajeri Khorasani, Pegah Mousavi, Nima Sanadgol
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Deconvolution of cellular subsets in human tissue based on targeted DNA methylation analysis at individual CpG sites2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Epigenetics and DNA Methylation Open access
Marco F. Schmidt, Tiago Maié, Edgar Dahl, Ivan G. Costa, Wolfgang Wagner
2citations -
Comprehensive Analysis of Human Dendritic Spine Morphology and Density: Exploring Diversity of Human Dendritic Spines2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Neuroscience Neuroscience and Neuropharmacology Research
Kerstin D Schünemann, Roxanne M Hattingh, Matthijs B Verhoog, Danqing Yang, Aniella Bak, Sabrina Peter, +14 more
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Spike-by-Spike Frequency Analysis of Amperometry Traces Provides Statistical Validation of Observations in the Time Domain2023 arXiv (Cornell University) preprint Biochemistry, Genetics and Molecular Biology Advanced Fluorescence Microscopy Techniques Open access
Jeyashree Krishnan, Zeyu Lian, Pieter E. Oomen, Xiulan He, Soodabeh Majdi, Andreas Schuppert, +1 more
0citations