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Collaborative network analysis for the interpretation of transcriptomics data in rare diseases, an application to Huntington’s disease2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Ozan Özışık, Tooba Abbassi‐Daloii, Morgane Térézol, Núria Queralt-Rosiñach, Annika Jacobsen, Osman Uğur Sezerman, +5 more
0citations -
iSODA: A Comprehensive Tool for Integrative Omics Data Analysis in Single- and Multi-Omics Experiments2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Damien Olivier‐Jimenez, Rico J. E. Derks, Oscar Harari, Carlos C Cruchaga, Muhammad Asri Mohd Ali, Alessandro Ori, +5 more
0citations -
FERMO: a Dashboard for Automated Prioritization of Molecular Features from Mass Spectral Data2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Metabolomics and Mass Spectrometry Studies Open access
Mitja M. Zdouc, Hannah E. Augustijn, Nataliia V. Machushynets, Lina M. Bayona, Sylvia Soldatou, Niek De Jonge, +5 more
17citations -
Opening the Black Box: Towards inherently interpretable energy data imputation models using building physics insight2023 arXiv (Cornell University) preprint Engineering Building Energy and Comfort Optimization Open access
Antonio Liguori, Matías Quintana, Chun Fu, Clayton Carl Miller, Jérôme Frisch, Christoph van Treeck
0citations -
Uncertain Case Identifiers in Process Mining: A User Study of the Event-Case Correlation Problem on Click Data2022 arXiv (Cornell University) preprint Business, Management and Accounting Business Process Modeling and Analysis Open access
Marco Pegoraro, Merih Seran Uysal, Tom-Hendrik Hülsmann, Wil M. P. van der Aalst
0citations -
Large-Language Models for data extraction from written kidney biopsy reports2026 medRxiv preprint Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Leon Niggemeier, David Laurin Hölscher, Tim CJ Herkens, Philine Gilles, Peter Böör, Roman David Bülow
1citations -
scTopoGAN: unsupervised manifold alignment of single-cell data2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Akash Kumar Singh, Marcel J. T. Reinders, Ahmed Essam Mahfouz, Tamim Abdelaal
1citations -
DAISIEprep: an R package for the extraction and formatting of data for the island biogeography model DAISIE2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Environmental Science Ecology and Vegetation Dynamics Studies Open access
Joshua W. Lambert, Lizzie Roeble, Théo Pannetier, Rampal S. Etienne, Luís Valente
0citations -
CAVACHON: a hierarchical variational autoencoder to integrate multi-modal single-cell data2024 arXiv (Cornell University) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Ping‐Han Hsieh, Ru-Xiu Hsiao, Katalin Ferenc, Anthony Mathelier, Rebekka Burkholz, Chien‐Yu Chen, +3 more
0citations -
SpaceWalker: Interactive Gradient Exploration for Spatial Transcriptomics Data2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Chang Li, Julian Thijssen, Tamim Abdelaal, Thomas Höllt, Boudewijn P. F. Lelieveldt
2citations -
Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Mehdi Joodaki, Mina Shaigan, Roman David Bülow, Christoph Kuppe, David Laurin Hölscher, Mingbo Cheng, +9 more
8citations -
The AccelerAge framework: A new statistical approach to predict biological age based on time-to-event data2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genetics, Aging, and Longevity in Model Organisms Open access
Marije H. Sluiskes, Jelle J. Goeman, Marian Beekman, P. Eline Slagboom, Erik B. van den Akker, Hein Putter, +1 more
1citations -
The Bradly-Terry Regression Trunk approach for modelling preference data with small trees2021 arXiv (Cornell University) preprint Economics, Econometrics and Finance Economic and Environmental Valuation Open access
Alessio Baldassarre, Elise Dusseldorp, Antonio D’Ambrosio, Mark de Rooij, Claudio Conversano
0citations