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Water-triggered, irreversible conformational change of SARS-CoV-2 main protease on passing from the solid state to aqueous solution2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Protein Structure and Dynamics Open access
Narjes Ansari, Valerio Rizzi, Paolo Carloni, Michele Parrinello
4citations -
Deciphering conformational selectivity in the A 2A adenosine G protein-coupled receptor by Free Energy simulations2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Receptor Mechanisms and Signaling Open access
Willem Jespers, Laura H. Heitman, Adriaan P. IJzerman, Eddy Sotelo, Gerard J. P. van Westen, Johan Åqvist, +1 more
1citations -
Protein semi-synthesis enables real-time optical tracking of intracellular conformational changes during sodium channel inactivation2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Ion channel regulation and function Open access
Laurie Peverini, Michelle Nilsson, Iacopo Galleano, Vita Sereika-Bejder, Emma Krindel Beyer, Lukas Fagerlund, +4 more
0citations -
High-resolution cryo-EM structure of integrin αIIbβ3 bound to disease-causing maternal HPA-1a antibody that blocks integrin activation2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Cell Adhesion Molecules Research Open access
José M. de Pereda, Wendy Stam, Marcos Gragera, Femke S. van der Meer, Francisco Javier Chichón, Eleftherios Zarkadas, +4 more
0citations -
Direct observation of Hsp90-induced compaction in a protein chain2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Heat shock proteins research Open access
Alireza Mashaghi, Fatemeh Moayed, Eline J. Koers, Günter Krämer, Matthias P. Mayer, Sander J. Tans
2citations -
Cryo-EM structures reveal how ATP and DNA binding in MutS coordinate the sequential steps of DNA mismatch repair2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology DNA Repair Mechanisms Open access
Alessandro Borsellini, Vladislav Kunetsky, Peter Friedhoff, Meindert Hugo Lamers
1citations -
Reliability and accuracy of single-molecule FRET studies for characterization of structural dynamics and distances in proteins2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Advanced Fluorescence Microscopy Techniques Open access
Ganesh N. Agam, Christian Gebhardt, Milana Popara, Rebecca Mächtel, Julian Folz, Benjamin Ambrose, +41 more
14citations -
Molecular basis of ligand binding and receptor activation at the human A3 adenosine receptor2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Adenosine and Purinergic Signaling Open access
Liudi Zhang, Jesse I. Mobbs, Felix M. Bennetts, Hariprasad Venugopal, Anh T. N. Nguyen, Arthur Christopoulos, +5 more
1citations -
Structural insights into 3Fe-4S ferredoxins diversity in M.tuberculosis highlighted by a first redox complex with P4502022 bioRxiv (Cold Spring Harbor Laboratory) preprint Materials Science Enzyme Structure and Function Open access
Andrei A. Gilep, Tatsiana Varaksa, Sergey S. Bukhdruker, Anton Kavaleuski, Yury L. Ryzhykau, Sviatlana V. Smolskaya, +17 more
0citations -
Integrative dynamic structural biology unveils conformers essential for the oligomerization of a large GTPase2020 arXiv (Cornell University) preprint Biochemistry, Genetics and Molecular Biology Protein Structure and Dynamics Open access
Thomas-Otavio Peulen, Carola S. Hengstenberg, Ralf Biehl, Mykola Dimura, Charlotte Lorenz, Alessandro Valeri, +6 more
1citations -
Insights into the mechanisms of LOV domain color tuning from a set of high-resolution X-ray structures2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Neuroscience Photoreceptor and optogenetics research Open access
Alina Remeeva, Vera V. Nazarenko, Kirill Kovalev, Ivan M. Goncharov, Anna Yudenko, Roman Astashkin, +2 more
5citations -
Rapid prediction of thermodynamically destabilizing tyrosine phosphorylations in cancers2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Machine Learning in Bioinformatics Open access
Jaie C. Woodard, Atena Malemir Chegini, Jian Tian, Rupa Bhowmick, Subramanium Pennathur, Alireza Mashaghi, +2 more
2citations -
Estimating the redox state of the plastoquinone pool in algae and cyanobacteria via OJIP fluorescence: perspectives and limitations2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Photosynthetic Processes and Mechanisms Open access
Tomáš Zavřel, Anne-Christin Pohland, Tobias Pfennig, Anna Matuszyńska, Szilvia Zita Tóth, Gábor Bernát, +1 more
0citations -
Epigenetic editing at individual age-associated CpGs affects the genome-wide epigenetic aging landscape2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Epigenetics and DNA Methylation Open access
Sven Liesenfelder, Mohamed H. Elsafi Mabrouk, Jessica Iliescu, Monica Varona Baranda, Athanasia Mizi, Martina Wessiepe, +2 more
5citations