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Evaluation of SURUS: a Named Entity Recognition System to Extract Knowledge from Interventional Study Records2024 medRxiv preprint Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Casper Peeters, Koen Vijverberg, Marianne G. Pouwer, Bart A. Westerman, Maikel Boot, Suzan Verberne
1citations -
From Clinical Intent to Clinical Model: Autonomous Coding-Agents for Clinician-driven AI Development2026 arXiv (Cornell University) preprint Medicine Artificial Intelligence in Healthcare and Education Open access
Zihao Zhao, Frederik Hauke, Juliana de Castilhos, Mathis Bode, Jakob Nikolas Kather, Sven Nebelung, +1 more
0citations -
CDE-Mapper: Using Retrieval-Augmented Language Models for Linking Clinical Data Elements to Controlled Vocabularies2025 arXiv (Cornell University) preprint Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Komal Gilani, Marlo Verket, Michel J. Dumontier, Hans‐Peter Brunner‐La Rocca, Visara Urovi
0citations -
Development of a Pipeline for Adverse Drug Reaction Identification in Clinical Notes: Word Embedding Models and String Matching (Preprint)2021 preprint Pharmacology, Toxicology and Pharmaceutics Pharmacovigilance and Adverse Drug Reactions Open access
Klaske R Siegersma, Maxime Evers, Sophie H. Bots, Floor Groepenhoff, Yolande Appelman, Leonard Hofstra, +5 more
0citations -
From Large Language Models to Knowledge Graphs for Biomarker Discovery in Cancer2023 arXiv (Cornell University) preprint Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Md. Rezaul Karim, Lina Molinas Comet, Md Shajalal, Oya Beyan, Dietrich Rebholz‐Schuhmann, Stefan Decker
3citations -
A patient-centric knowledge graph approach to prioritize mutants for selective anti-cancer targeting2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Marina Gorostiola González, Adriaan P. IJzerman, Gerard J. P. van Westen
0citations -
A computational solution for bolstering reliability of epigenetic clocks: Implications for clinical trials and longitudinal tracking2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Epigenetics and DNA Methylation Open access
Albert Higgins‐Chen, Kyra Thrush, Yunzhang Wang, Pei‐Lun Kuo, Meng Wang, Christopher J. Minteer, +17 more
43citations -
AI-powered virtual tissues from spatial proteomics for clinical diagnostics and biomedical discovery2025 arXiv (Cornell University) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Johann Wenckstern, Eeshaan Jain, Kiril Vasilev, Matteo Pariset, Phil Fang Cheng, Olivier Alain Michielin, +3 more
10citations -
Biomedical Large Languages Models Seem not to be Superior to Generalist Models on Unseen Medical Data2024 arXiv (Cornell University) preprint Medicine Artificial Intelligence in Healthcare and Education Open access
Felix J. Dorfner, Amin Dada, Felix Busch, Marcus R. Makowski, Daniel Truhn, Jens Kleesiek, +4 more
8citations -
MultiGML: Multimodal Graph Machine Learning for Prediction of Adverse Drug Events2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Computer Science Computational Drug Discovery Methods Open access
Sophia Krix, Lauren Nicole DeLong, Sumit Madan, Daniel Domingo‐Fernándéz, Ashar Ahmad, Sheraz Gul, +2 more
3citations -
Agentic retrieval-augmented reasoning reshapes collective reliability under model variability in radiology question answering2026 arXiv (Cornell University) preprint Medicine Artificial Intelligence in Healthcare and Education Open access
Mina Farajiamiri, Jeta Sopa, Saba Afza, Lisa Adams, Felix Barajas Ordonez, Tri-Thien Nguyen, +6 more
0citations