Papers matching “FAIR principles” in Biomedical Text Mining and Ontologies 13
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Semantic modelling of common data elements for rare disease registries, and a prototype workflow for their deployment over registry data2022 Journal of Biomedical Semantics article Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Rajaram Kaliyaperumal, Mark D. Wilkinson, Pablo Alarcón Moreno, Nirupama Benis, Ronald Cornet, Bruna dos Santos Vieira, +13 more
48citations -
Semantic modelling of Common Data Elements for Rare Disease registries, and a prototype workflow for their deployment over registry data2021 medRxiv preprint Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Rajaram Kaliyaperumal, Mark D. Wilkinson, Pablo Alarcón Moreno, Nirupama Benis, Ronald Cornet, Bruna dos Santos Vieira, +12 more
9citations -
The use of foundational ontologies in biomedical research2023 Journal of Biomedical Semantics article Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
César H. Bernabé, Núria Queralt-Rosiñach, Vítor E. Silva Souza, Luiz Olavo Bonino da Silva Santos, Barend Mons, Annika Jacobsen, +1 more
24citations -
The use of Foundational Ontologies in Bioinformatics2022 Research Square preprint Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
César H. Bernabé, Núria Queralt-Rosiñach, Vítor E. Silva Souza, Luiz Olavo Bonino da Silva Santos, Barend Mons, Annika Jacobsen, +1 more
1citations -
The Cell Ontology in the age of single-cell omics2026 eScholarship (California Digital Library) article Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Shawn Zheng Kai Tan, Aleix Puig-Barbe, Damien Goutte-Gattat, Caroline Eastwood, Brian Aevermann, Alida Avola, +29 more
6citations -
Mapping OHDSI OMOP Common Data Model and GA4GH Phenopackets for COVID-19 disease epidemics and analytics2022 preprint Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Núria Queralt-Rosiñach, Pablo Alarcón Moreno, Tiffany J. Callahan, Giovanni Delussu, Charlotte Fraboulet, Leyla Jael Castro, +7 more
4citations -
The Cell Ontology in the age of single-cell omics2026 Scientific Data data-paper Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Shawn Zheng Kai Tan, Aleix Puig-Barbe, Damien Goutte-Gattat, Caroline Eastwood, Brian D. Aevermann, Alida Avola, +28 more
0citations -
Semantic Harmonization Workflow of Health Data: Application in the Post-COVID Network Netherlands2026 Studies in health technology and informatics book-chapter Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Hajar Hasannejadasl, Bianca M. Boxma‐de Klerk, Jos Bosch, Ronald Cornet, Sander MJ van Kuijk
0citations -
CMEO: a metadata-centric ontology for clinical studies exploration and harmonization assessment2026 Figshare other Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Komal Gilani, C. Peters, Marlo Verket, Hans‐Peter Brunner‐La Rocca, Enrico Nicolis, Martina Colombo, +3 more
0citations -
CMEO: a metadata-centric ontology for clinical studies exploration and harmonization assessment2026 Figshare other Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Komal Gilani, C. Peters, Marlo Verket, Hans‐Peter Brunner‐La Rocca, Enrico Nicolis, Martina Colombo, +3 more
0citations -
A Simple Standard for Sharing Ontological Mappings (SSSOM)2022 Database article Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Nicolas Matentzoglu, James P. Balhoff, Susan M. Bello, Chris Bizon, Matthew Brush, Tiffany J. Callahan, +35 more
89citations
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