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Genome-wide methylation profiling of cell-free DNA in maternal plasma using Methylated DNA Sequencing (MeD-seq)2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Epigenetics and DNA Methylation Open access
Marjolein M. van Vliet, Ruben Boers, Joachim Boers, Olivier J. M. Schäffers, Lotte E. van der Meeren, Régine P.M. Steegers‐Theunissen, +2 more
0citations -
Exploring Nanopore Direct Sequencing Performance of Forensic Strs, Snps, Indels, and DNA Methylation Markers in a Single Assay2024 SSRN Electronic Journal preprint Biochemistry, Genetics and Molecular Biology Forensic and Genetic Research Open access
Desiree D S H de Bruin, Martin A. Haagmans, Kristiaan J. van der Gaag, Jerry Hoogenboom, Niccoló Tesi, Alex Salazar, +5 more
2citations -
SECEDO: SNV-based subclone detection using ultra-low coverage single-cell DNA sequencing2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Cancer Genomics and Diagnostics Open access
Hana Rozhoňová, Daniel Danciu, Stefan G. Stark, Gunnar Rätsch, André Kahles, Kjong-Van Lehmann
1citations -
Benchmarking of shotgun sequencing depth highlights limitations of strain-level analysis and shallow metagenomics2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Nicole Simone Treichel, Joana Séneca, Petra Pjevac, David Berry, John Penders
5citations -
Sex-dependent gene regulation of human atherosclerotic plaques by DNA methylation and transcriptome integration points to smooth muscle cell involvement in women2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Epigenetics and DNA Methylation Open access
Robin J. G. Hartman, Marten A. Siemelink, Saskia Haitjema, Koen F. Dekkers, Lotte Slenders, Arjan Boltjes, +8 more
3citations -
Physical activity specifically evokes release of cell-free DNA from granulocytes thereby affecting liquid biopsy2021 medRxiv preprint Biochemistry, Genetics and Molecular Biology Cancer Genomics and Diagnostics Open access cited by 3 patents
Elmo W. I. Neuberger, Stephanie Sontag, Alexandra Brahmer, Keito F A Philippi, Markus Philipp Radsak, Wolfgang Wagner, +1 more
5citations -
De novo whole genome assembly of the globally invasive green shore crab Carcinus maenas (Linnaeus, 1758) via long-read Oxford Nanopore MinION sequencing2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Jolanda K. Brons, Thomas Hackl, Riccardo Iacovelli, Kristina Haslinger, Sébastian Lequime, Sancia E. T. van der Meij
0citations -
Resolution of the D4Z4 repeat responsible for facioscapulohumeral muscular dystrophy with HiFi sequencing2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genomics and Rare Diseases Open access
Xiao Chen, Richard J.L.F. Lemmers, Zev N. Kronenberg, Joseph M. Devaney, Jessica Noya, April S. Berlyoung, +7 more
0citations -
Multi-compartment impact of micropollutants and particularly antibiotics on bacterial communities using environmental DNA at river basin-level2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Environmental Science Pharmaceutical and Antibiotic Environmental Impacts Open access
Pedro A. Inostroza, Gerdhard L Jessen, Feilong Li, Xiaowei Zhang, Werner Brack, Thomas Backhaus
0citations -
Genome sequencing of the neotype strain CBS 554.65 reveals the MAT1-2 locus of Aspergillus niger2021 Research Square preprint Biochemistry, Genetics and Molecular Biology Fungal and yeast genetics research Open access
Valeria Ellena, Sjoerd J. Seekles, Arthur F. J. Ram, Matthias G. Steiger
1citations -
Epigenetic age-predictions in mice using pyrosequencing, droplet digital PCR or barcoded bisulfite amplicon sequencing2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Epigenetics and DNA Methylation Open access
Yang Han, Miloš Nikolić, Michael Gobs, Julia Franzen, Gerald de Haan, Hartmut Geiger, +1 more
0citations -
Single cell RNA sequence analysis of human bone marrow samples reveals new targets for isolation of skeletal stem cells using DNA-coated gold nanoparticles2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Mesenchymal stem cell research Open access
Elloise Matthews, Stuart Lanham, Maria Eleni Kyriazi, Konstantina Alexaki, Afaf Helmy El-Sagheer, Tom Brown, +5 more
3citations -
Multi-Compartment Impact of Micropollutants and Particularly Antibiotics on Bacterial Communities Using Environmental DNA at River Basin-Level2024 SSRN Electronic Journal preprint Environmental Science Pharmaceutical and Antibiotic Environmental Impacts Open access
Pedro A. Inostroza, Gerdhard L Jessen, Feilong Li, Xiaowei Zhang, Werner Brack, Thomas Backhaus
0citations -
Genotyping by Sequencing for Estimating Relative Abundances of Diatom Taxa in Mock Communities2022 Research Square preprint Environmental Science Environmental DNA in Biodiversity Studies Open access
Ozan Çiftçi, Cornelis A. M. Wagemaker, Adrienne Mertens, Peter M. van Bodegom, Walter Pirovano, Barbara Gravendeel
0citations -
A stepwise short- and long-read whole genome sequencing strategy resolves previous genetically unresolved inherited retinal disease cases2026 medRxiv preprint Biochemistry, Genetics and Molecular Biology Genomics and Rare Diseases Open access
Kim Rodenburg, Stefanida Shliaga, Lonneke Haer‐Wigman, Anneke T. Vulto‐van Silfhout, Erica G. M. Boonen, Lara K. Holtes, +24 more
0citations -
Development of an amplicon nanopore sequencing strategy for detection of mutations conferring intermediate resistance to vancomycin in Staphylococcus aureus strains2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Antimicrobial Resistance in Staphylococcus Open access
Abraham G Moller, Robert A. Petit, Michelle H. Davis, Timothy D. Read
0citations -
The interplay of DNA repair context with target sequence predictably biases Cas9-generated mutations2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology CRISPR and Genetic Engineering Open access
Ananth Pallaseni, Elin Madli Peets, Gareth Girling, Ivan Kuzmin, Marilin Moor, Núria Muñoz-Subirana, +7 more
1citations -
Chemoenzymatic labeling of DNA methylation patterns for single-molecule epigenetic mapping2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Epigenetics and DNA Methylation Open access
Tslil Gabrieli, Yael Michaeli, Sigal Avraham, Dmitry Torchinsky, Matyas Juhasz, Ceyda Çoruh, +5 more
7citations