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Percolate: an exponential family JIVE model to design DNA-based predictors of drug response2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Gene expression and cancer classification Open access
Soufiane M. C. Mourragui, Marco Loog, Mirrelijn M. van Nee, Mark A. van de Wiel, Marcel J. T. Reinders, Lodewyk F.A. Wessels
1citations -
RGT: a toolbox for the integrative analysis of high throughput regulatory genomics data2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genomics and Chromatin Dynamics Open access
Zhijian Li, Chao‐Chung Kuo, Fabio Ticconi, Mina Shaigan, Eduardo Gade Gusmao, Manuel Allhoff, +3 more
2citations -
A computational solution for bolstering reliability of epigenetic clocks: Implications for clinical trials and longitudinal tracking2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Epigenetics and DNA Methylation Open access
Albert Higgins‐Chen, Kyra Thrush, Yunzhang Wang, Pei‐Lun Kuo, Meng Wang, Christopher J. Minteer, +17 more
43citations -
Weighted 2D-kernel density estimations provide a new probabilistic measure for epigenetic age2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Epigenetics and DNA Methylation Open access
Juan-Felipe Perez-Correa, Thomas Stiehl, Riccardo E. Marioni, Janie Corley, Simon R. Cox, Ivan G. Costa, +1 more
2citations -
Novel histones and histone variant families in prokaryotes2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genomics and Chromatin Dynamics Open access
Samuel Schwab, Yimin Hu, Bert van Erp, Marc K M Cajili, Marcus D. Hartmann, Birte Hernandez Alvarez, +3 more
5citations -
Low mitochondrial copy number drives atherogenic cardiovascular disease: evidence from prospective cohort analyses in the UK Biobank combined with Mendelian Randomization2021 medRxiv preprint Biochemistry, Genetics and Molecular Biology Genetic Associations and Epidemiology Open access
Jiao Min Luo, Raymond Noordam, J. Wouter Jukema, Ko Willems van Dijk, Sara Hägg, Felix Graßmann, +2 more
6citations -
SIngle cell level Genotyping Using scRna Data (SIGURD)2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Martin Graßhoff, Milena Kalmer, Nicolas Chatain, Kim Kricheldorf, Angela Maurer, Ralf Weiskirchen, +2 more
0citations -
Resolution of the D4Z4 repeat responsible for facioscapulohumeral muscular dystrophy with HiFi sequencing2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genomics and Rare Diseases Open access
Xiao Chen, Richard J.L.F. Lemmers, Zev N. Kronenberg, Joseph M. Devaney, Jessica Noya, April S. Berlyoung, +7 more
0citations -
Deterministic Non-cooperative Binding in Two-Dimensional Tile Assembly Systems Must Have Ultimately Periodic Paths2022 arXiv (Cornell University) preprint Biochemistry, Genetics and Molecular Biology DNA and Biological Computing Open access
Jérôme Olivier Durand-Lose, Hendrik Jan Hoogeboom, Nataša Jonoska
0citations -
Designing synthetic communities with organism-free modular computational models2022 ChemRxiv preprint Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access
Anna Matuszyńska, Oliver Ebenhöh, Matias Daniel Zurbriggen, Daniel C. Ducat, Ilka Maria IM Axmann
0citations -
Determining off-target effects of splice-switching antisense oligonucleotides using short read RNAseq in neuronally differentiated human induced pluripotent stem cells2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology RNA Research and Splicing Open access
Elsa C. Kuijper, Linda M. van der Graaf, Barry A. Pepers, Mariana Guimarães Ramos, Sylvia Korhorn, Davy Cats, +4 more
1citations -
Ecology of prophage-like elements in Bacillus subtilis at global and local geographical scale2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Environmental Science Bacteriophages and microbial interactions Open access
Polonca Štefanič, Eva Stare, Valentina A. Floccari, Jasna Kovač, Robert Hertel, Ulisses Nunes da Rocha, +4 more
1citations
17 results