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Benchmarking computational methods for B-cell receptor reconstruction from single-cell RNA-seq data2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Tommaso Andreani, Linda M. Slot, Samuel Gabillard, Carsten Struebing, Claus Reimertz, Yaligara Veeranagouda, +6 more
4citations -
Longitudinal dynamics of human B-cell response at single-cell level in response to Tdap vaccination2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology T-cell and B-cell Immunology Open access
Indu Khatri, Annieck M. Diks, Erik B. van den Akker, Liesbeth E.M. Oosten, Jaap Jan Zwaginga, Marcel J. T. Reinders, +2 more
0citations -
A proteomic map of B cell activation and its shaping by mTORC1, MYC and iron2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology PI3K/AKT/mTOR signaling in cancer Open access
Olivia James, Linda V. Sinclair, Nadejda Lefter, Andrew J.M. Howden
1citations -
Multi-omic profiling of human thymic B cells reveals intrathymic Ig-class switching and differentiation into multiple memory B cell subsets2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology T-cell and B-cell Immunology Open access
Martijn Cordes, Erik B. van den Akker, Janine E. Melsen, Saskia Bunschuh, Aline Zbinden, Sandra de Bruin-Versteeg, +8 more
0citations -
EOMES and IL-10 regulate anti-tumor activity of PD-1 + CD4 + T-cells in B-cell Non-Hodgkin lymphoma2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology T-cell and B-cell Immunology Open access
Philipp M. Roessner, Laura Llaó Cid, Ekaterina Lupar, Tobias Roider, Marie Bordas, Christoph Schifflers, +10 more
4citations -
Tviblindi algorithm identifies branching developmental trajectories of human B cell development2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology T-cell and B-cell Immunology Open access
Marina Bakardjieva, Jan Stuchlý, Ondřej Pelák, Marjolein W. J. Wentink, Hana Glier, David Novák, +6 more
1citations -
Autoantibody subclass predominance is not driven by aberrant class switching or impaired B cell development2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Myasthenia Gravis and Thymoma Open access
Laurent M. Paardekooper, Yvonne E. Fillié‐Grijpma, Alita J. van der Sluijs‐Gelling, Mihaela Zlei, Remco van Doorn, Maarten H. Vermeer, +6 more
0citations -
B cells maintain the homeostasis of splenic marginal zone antigen-presenting cells to promote the anti-viral CD8 + T cell response2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology Immunotherapy and Immune Responses Open access
Filiz Demircik, Emmanouil Stylianakis, Matthias Klein, David Alejandro Bejarano, Abdelrahman Elwy, Anna Ebering, +16 more
1citations -
Reference-based comparison of adaptive immune receptor repertoires2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology T-cell and B-cell Immunology Open access
Cédric R. Weber, Teresa Rubio, Longlong Wang, Wei Zhang, Philippe Auguste Robert, Rahmad Akbar, +9 more
5citations -
Distinct transcriptional programs define human IgG4 + memory B cells2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology T-cell and B-cell Immunology Open access
Laurent M. Paardekooper, Jessica M van Bokkum, Yvonne E. Fillié‐Grijpma, Dana L.E. Vergoossen, Isabel Benner, Theresa Kissel, +5 more
0citations -
Public T-Cell Receptors (TCRs) Revisited by Analysis of the Magnitude of Identical and Highly-Similar TCRs in Virus-Specific T-Cell Repertoires of Healthy Individuals2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology T-cell and B-cell Immunology Open access
Wesley Huisman, Lois Hageman, Didier A.T. Leboux, Alexandra A. Khmelevskaya, Grigory Aleksandrovich Efimov, Marthe C.J. Roex, +3 more
5citations -
SR-BI regulates the synergistic mast cell response by modulating the plasma membrane-associated cholesterol pool2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology Mast cells and histamine Open access
Sandro Capellmann, Marlies Kauffmann, Michel Arock, Michael Huber
0citations -
Cross-presentation of citrullinated antigens drives cytotoxic CD8 + T cell responses in rheumatoid arthritis2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Rheumatoid Arthritis Research and Therapies Open access
Jae‐Seung Moon, Mengrui Zhang, Laura S. van Dam, Eun Kyung Song, Orr Sharpe, Julie Carman, +6 more
0citations -
SARS-CoV-2-specific CD4 + and CD8 + T cell responses can originate from cross-reactive CMV-specific T cells2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine SARS-CoV-2 and COVID-19 Research Open access
Cilia R. Pothast, Romy C. Dijkland, Melissa Thaler, Renate S. Hagedoorn, Michel G.D. Kester, Anne K. Wouters, +5 more
1citations -
Immunophenotyping of T cells Combined with Vβ antibodies identifies long lasting CMV related T cell Expansions with a consistent TIGIT and PD-1 phenotype2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology T-cell and B-cell Immunology
Monique M. van Ostaijen-ten Dam, Marco W. Schilham, Arjan C. Lankester, Janine E. Melsen
0citations -
Autoreactive B cells in rheumatoid arthritis consist of activated CXCR3+ memory B cells and plasmablasts2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Rheumatoid Arthritis Research and Therapies Open access
Sanne Reijm, Joanneke C. Kwekkeboom, Nienke J. Blomberg, Jolien Suurmond, Diane van der Woude, René E. M. Toes, +1 more
1citations -
Clonal autoantibodies identify microbial antigen as trigger of autoreactive B cells in systemic sclerosis2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Systemic Sclerosis and Related Diseases Open access
Sam Neppelenbroek, Sophie I E Liem, Theo van Laar, Eva M. Hoekstra, Corrie M. Wortel, E. W. Nivine Levarht, +5 more
0citations -
Ageing of the Upper Airway Epithelial Niche Limits Tissue-Resident T Cell Immunity2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology T-cell and B-cell Immunology Open access
Wesley Huisman, Lisa A. King, Youvika Singh, Alicia C. de Kroon, Rosanne A. M. Steenbergen, Iris van der Valk, +19 more
0citations -
Fatty acid desaturation by stearoyl-CoA desaturase-1 controls regulatory T cell differentiation and autoimmunity2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology T-cell and B-cell Immunology Open access
Elien Grajchen, Melanie Loix, Paulien Baeten, Beatriz F. Côrte‐Real, Ibrahim Hamad, Mansour Haidar, +14 more
4citations -
TNFR2 costimulation differentially impacts regulatory and conventional CD4 + T-cell metabolism2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology T-cell and B-cell Immunology Open access
Mark Mensink, Esther A. Zaal, Thi Tran Ngoc Minh, Ellen Schrama, Celia R. Berkers, Jannie G. Borst, +1 more
0citations -
CACTUS: integrating clonal architecture with genomic clustering and transcriptome profiling of single tumor cells2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Shadi Darvish Shafighi, Szymon M. Kiełbasa, Julieta Sepúlveda-Yáñez, Ramin Monajemi, Davy Cats, Hailiang Mei, +5 more
4citations -
CaClust: linking genotype to transcriptional heterogeneity of follicular lymphoma using BCR and exomic variants2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Kazimierz Oksza-Orzechowski, Edwin Quinten, Shadi Darvish Shafighi, Szymon M. Kiełbasa, Hugo W van Kessel, Ruben A. L. de Groen, +6 more
1citations