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DeepMed: A unified, modular pipeline for end-to-end deep learning in computational pathology2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Computer Science AI in cancer detection Open access
Marko van Treeck, Didem Çifçi, Narmin Ghaffari Laleh, Oliver Lester Saldanha, Chiara Maria Lavinia Loeffler, Katherine Jane Hewitt, +9 more
13citations -
Predicting clinical drug response from model systems by non-linear subspace-based transfer learning2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Computer Science Computational Drug Discovery Methods Open access
Soufiane M. C. Mourragui, Marco Loog, Daniël J. Vis, Kat S Moore, Anna G. Manjón, Mark A. van de Wiel, +2 more
9citations -
Analysis of the 2024 BraTS Meningioma Radiotherapy Planning Automated Segmentation Challenge2024 arXiv (Cornell University) preprint Neuroscience Brain Tumor Detection and Classification Open access
Dominic LaBella, Adrià Casamitjana, Behrus Puladi, Katherine M. Schumacher, Michael D. Mix, Kevin Leu, +54 more
7citations -
Bird song comparison using deep learning trained from avian perceptual judgments2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Animal Vocal Communication and Behavior Open access
Lies Zandberg, Veronica Morfi, Julia M. George, David F. Clayton, Dan Stowell, Robert F. Lachlan
7citations -
LncRNA-BERT: An RNA Language Model for Classifying Coding and Long Non-Coding RNA2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Luuk Romeijn, Davy Cats, Katherine Wolstencroft, Hailiang Mei
4citations -
E/I ratio and net E+I strength are differentially affected across brain disorders2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Neuroscience Neural dynamics and brain function Open access
Arthur-Ervin Avrămiea, Marina Diachenko, Andrew Westbrook, Richard Hardstone, Huibert D. Mansvelder, Hilgo Bruining, +1 more
3citations -
Mining the contribution of intensive care clinical course to outcome after traumatic brain injury2023 arXiv (Cornell University) preprint Computer Science Machine Learning in Healthcare Open access
Shubhayu Bhattacharyay, Pier Francesco Caruso, Cecilia A. I. Åkerlund, Lindsay Wilson, Robert David Stevens, David Krishna Menon, +3 more
2citations -
Predicting Rhizosphere Competence Related Catabolic Gene Clusters in plant-associated bacteria with RhizoSMASH2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Plant-Microbe Interactions and Immunity Open access
Yuze Li, Mingxue Sun, Jos M. Raaijmakers, Liesje Mommer, Fusuo S. Zhang, Chunxu Song, +1 more
2citations