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Cohort profile: the CORDELIA study (Collaborative cOhorts Reassembled Data to study mEchanisms and Longterm Incidence of chronic diseAses)2025 European Journal of Epidemiology article Biochemistry, Genetics and Molecular Biology Genetic Associations and Epidemiology Open access
Álvaro Hernáez, Sara Polo-Alonso, Isaac Subirana, Rafel Ramos, Rafael de Cid, Fernando Rodríguez‐Artalejo, +80 more
1citations -
WALDO: community-Wide Annotation of γδ Lymphocytes in single-cell Data, Openly benchmarked2026 Zenodo (CERN European Organization for Nuclear Research) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Farid Keramati, Moosa Rezwani, Likai Tan, David Hamilton, Zheng Song, Tao Yang, +10 more
0citations -
A community resource for paired genomic and metabolomic data mining2021 Nature Chemical Biology article Medicine Microbial Natural Products and Biosynthesis Open access cited by 1 patent
Michelle Schorn, Stefan Verhoeven, Lars Ridder, Florian Huber, Deepa D. Acharya, Alexander A. Aksenov, +93 more
130citations -
A phenotype-driven data and drug repurposing strategy used to identify potential treatments targeting chondrocyte hypertrophy in osteoarthritis2025 Biomedicine & Pharmacotherapy article Medicine Osteoarthritis Treatment and Mechanisms Open access
Judith Veldman, Mauricio N. Ferrao Blanco, Nicole Kops, Wendy J. L. M. Koevoet, Eric M. Bindels, Gregory van Beek, +5 more
0citations -
Omic-Scale High-Throughput Quantitative LC–MS/MS Approach for Circulatory Lipid Phenotyping in Clinical Research2023 Analytical Chemistry article Biochemistry, Genetics and Molecular Biology Metabolomics and Mass Spectrometry Studies Open access
Jessica M. Medina, Rébecca Borreggine, Tony Teav, Liang Gao, Shanshan Ji, Justin Carrard, +10 more
51citations -
‘Omic-scale quantitative HILIC-MS/MS approach for circulatory lipid phenotyping in clinical research2022 ChemRxiv preprint Biochemistry, Genetics and Molecular Biology Metabolomics and Mass Spectrometry Studies Open access
Jessica M. Medina, Rébecca Borreggine, Tony Teav, Liang Gao, Shanshan Ji, Justin Carrard, +10 more
2citations -
BERNN: Enhancing classification of Liquid Chromatography Mass Spectrometry data with batch effect removal neural networks2024 Nature Communications article Biochemistry, Genetics and Molecular Biology Metabolomics and Mass Spectrometry Studies Open access cited by 1 patent
Simon J. Pelletier, Mickaël Leclercq, Florence Roux‐Dalvai, Matthijs B. de Geus, Shannon N. Leslie, Weiwei Wang, +6 more
24citations -
Semi and fully automated immunostaining sample preparation platforms improve live leukocyte recovery, reproducibility, and flow cytometry data quality2022 The Journal of Immunology conference-abstract Engineering Microfluidic and Bio-sensing Technologies
Geoffrey K. Feld, Melvin Lye, Christoph S. Eberle, Ann Wang, Chyan Ying Ke
0citations -
Enzyme-Constrained Models and Omics Analysis of Streptomyces coelicolor Reveal Metabolic Changes that Enhance Heterologous Production2020 iScience article Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Snorre Sulheim, Tjaša Kumelj, Dino van Dissel, Ali Salehzadeh‐Yazdi, Chao Du, Kay Nieselt, +3 more
46citations -
Multi-omics approach identifies PI3 as a biomarker for disease severity and hyper-keratinization in psoriasis2023 Journal of Dermatological Science article Immunology and Microbiology Psoriasis: Treatment and Pathogenesis Open access
Jingwen Deng, Emmerik F A Leijten, Yongzhan Zhu, Michel Olde Nordkamp, Shuyan Ye, Juliëtte N. Pouw, +8 more
29citations -
Mapping naturally presented T cell antigens in medulloblastoma based on integrative multi-omics2025 Nature Communications article Immunology and Microbiology Immunotherapy and Immune Responses Open access
Julia Velz, Lena Katharina Freudenmann, Gioele Medici, Marissa Lisa Dubbelaar, Malte Mohme, David R. Ghasemi, +31 more
8citations -
Multidimensional OMICs reveal ARID1A orchestrated control of DNA damage, splicing, and cell cycle in normal‐like and malignant urothelial cells2025 Molecular Oncology article Biochemistry, Genetics and Molecular Biology Chromatin Remodeling and Cancer Open access
R. Schlosser, Florian Krumbach, Eyleen Corrales, Geoffroy Andrieux, Christian Preisinger, Franziska Liss, +6 more
3citations -
Biomimetic Total Synthesis and Paired Omics Identify an Intermolecular Diels–Alder Reaction as the Key Step in Lugdunomycin Biosynthesis2025 Journal of the American Chemical Society article Medicine Microbial Natural Products and Biosynthesis Open access
Michiel T. Uiterweerd, Isabel Nuñez Santiago, Ana V. Cunha, Remco W. A. Havenith, Chao Du, Le Zhang, +4 more
2citations -
TbasCO: Trait-based Comparative ’Omics Identifies Ecosystem-Level and Niche- Differentiating Adaptations of an Engineered Microbiome2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Elizabeth McDaniel, Joris J.M. van Steenbrugge, Daniel R. Noguera, Katherine D. McMahon, Jos M. Raaijmakers, Marnix H. Medema, +1 more
1citations -
Mapping the Molecular Atlas of Podocyte Response to Glucocorticoids Using Multi-Omics Analyses2023 Journal of the American Society of Nephrology conference-abstract Medicine Renal Diseases and Glomerulopathies
Martijn van den Broek, Bartholomeus T. van den Berge, Michiel F. Schreuder, Bart Smeets, Jitske Jansen
0citations -
Atlas-scale spatially aware clustering with support for 3D and multimodal data using SpatialLeiden2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Niklas Müller‐Bötticher, Alexander Malt, Paul Kießling, Roland Eils, Christoph Kuppe, Naveed Ishaque
0citations