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Identification of a Conserved Temporal Molecular Response Signature to CDK4/6 Inhibition Through Multi-Omics Integration Across Cancer Cell Lines2026 International Journal of Molecular Sciences article Medicine Advanced Breast Cancer Therapies Open access
Anna C Hogger, Klaus Mantwill, Nadine Therese Gaisa, Jürgen E. Gschwend, Roman Nawroth
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THER-02. Pediatric brain tumor cultures reveal differential susceptibility to four oncolytic viruses2022 Neuro-Oncology conference-abstract Biochemistry, Genetics and Molecular Biology Virus-based gene therapy research Open access
Konstantinos Vazaios, Εftychia Stavrakaki, Lisette B. Vogelezang, Bernadette G. van den Hoogen, Rob C. Hoeben, Antonio E. Chiocca, +6 more
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Abstract 1802: Personalization of oncolytic virus therapy: Heterogenous anti-tumor responses in preclinical prostate and bladder cancer models2023 Cancer Research conference-abstract Biochemistry, Genetics and Molecular Biology Virus-based gene therapy research
Thijs J. Janssen, Geertje van der Horst, Arjanneke F. van de Merbel, Maaike H. van der Mark, Martine L.M. Lamfers, Bernadette G. van den Hoogen, +8 more
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Colon cancer and cell transformation by clinical Salmonella strains are associated with bacterial virulence and intracellular fitness2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Salmonella and Campylobacter epidemiology Open access
Virginie Stévenin, Claudia E. Coipan, Janneke W. Duijster, Daphne M. van Elsland, Linda Voogd, Angela H. A. M. van Hoek, +7 more
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63 Infiltration by myeloid cells is an independent prognostic biomarker in vulvar squamous cell carcinoma, associated to stem cell-like features of the tumor2023 Regular and Young Investigator Award Abstracts conference-abstract Medicine Cancer Immunotherapy and Biomarkers Open access
Ziena Abdulrahman, Kim E. Kortekaas, Mariëtte I.E. van Poelgeest, Sjoerd van der Burg
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P225 Mucosal transcriptomic profiles associated with clinical response in patients with Ulcerative Colitis receiving filgotinib2024 Journal of Crohn s and Colitis conference-abstract Biochemistry, Genetics and Molecular Biology Inflammatory Bowel Disease Open access cited by 1 patent
Fernando Magro, Brian G. Feagan, Gerhard Rogler, Laurent Peyrin‐Biroulet, Yasmina Bauer, Lise Cougnaud, +4 more
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SIRV: Spatial inference of RNA velocity at the single-cell resolution2022 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Tamim Abdelaal, Laurens Grossouw, R. Jeroen Pasterkamp, Boudewijn P. F. Lelieveldt, Marcel J. T. Reinders, Ahmed Essam Mahfouz
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Cytosplore-Transcriptomics: a scalable inter-active framework for single-cell RNA sequenc-ing data analysis2020 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Tamim Abdelaal, Jeroen Eggermont, Thomas Höllt, Ahmed Essam Mahfouz, Marcel J. T. Reinders, Boudewijn P. F. Lelieveldt
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Cytosplore-Transcriptomics: a scalable inter-active framework for single-cell RNA sequenc-ing data analysis2020 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Tamim Abdelaal, Jeroen Eggermont, Thomas Höllt, Ahmed Essam Mahfouz, Marcel J. T. Reinders, Boudewijn P. F. Lelieveldt
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SpaGE Spatial Gene Enhancement using scRNA-seq2020 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Tamim Abdelaal, Soufiane M. C. Mourragui, Ahmed Essam Mahfouz, Marcel J. T. Reinders
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Single-Cell Transcriptomics Indicate That CD163+ Kidney Macrophages Are Pro-Inflammatory and May Orchestrate Further Immune Cell Recruitment to Kidney Lesions in ANCA-Associated Glomerulonephritis2022 Journal of the American Society of Nephrology conference-abstract Medicine Vasculitis and related conditions
Yosta Vegting, Aldo Jongejan, Ester B. M. Remmerswaal, Perry D. Moerland, Jesper Kers, Liffert Vogt, +2 more
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Classical Monocyte-Derived and Lipid-Associated TREM2+ Macrophages Orchestrate Inflammatory and Fibrotic Processes in ANCA-Associated Glomerulonephritis2023 Journal of the American Society of Nephrology conference-abstract Medicine Vasculitis and related conditions
Yosta Vegting, Aldo Jongejan, Annette E. Neele, Nike Claessen, Jesper Kers, Joris J. T. H. Roelofs, +7 more
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Bridging the Gap: biofilm-mediated establishment of Bacillus velezensis on Trichoderma guizhouense mycelia2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Plant-Microbe Interactions and Immunity Open access
Jiyu Xie, Xinli Sun, Yanwei Xia, Lili Tao, Taimeng Tan, Nan Zhang, +5 more
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End of preservation normothermic machine perfusion of porcine kidneys after ischaemic injury reprograms metabolism and induces fibrosis after transplant despite unchanged function: insights from the renal proteome2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Organ Transplantation Techniques and Outcomes Open access
John F. Mulvey, Corinna Snashall, Kaithlyn M. Rozenberg, Maria Letizia Lo Faro, Marco Eijken, Stine Lohmann, +10 more
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Totum-448, a polyphenol-rich plant extract, decreases hepatic steatosis and inflammation in diet-induced MASLD mice2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Liver Disease Diagnosis and Treatment Open access
Joost M. Lambooij, Vivien Chavanelle, Marie Vallier, Hendrik J.P. van der Zande, Yolanda F. Otero, Frank Otto, +7 more
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Long Non-Coding RNAs in Response to Ebola Virus Vaccine-Induced Immunity2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Cancer-related molecular mechanisms research Open access
Izabela Mamede, Thomaz Lüscher Dias, Isabelle Franco Moscardini, Barbara Marinho, Fernando Marcon, Thiago Dominguez Crespo Hirata, +11 more
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The landscape of tertiary lymphoid structures in endometrial cancer revealed through harmonized multi-level transcriptomics2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Cancer Immunotherapy and Biomarkers Open access
Marta Requesens, Koen Brummel, Arkajyoti Bhattacharya, Feija Somefun, Nienke van Rooij, Annechien Plat, +10 more
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C3G deregulation uncovers a dual role in B-cell lymphoma: tumor suppression and enhanced metastasis via Rap1 and Rac2 signaling2026 Figshare other Biochemistry, Genetics and Molecular Biology Protein Kinase Regulation and GTPase Signaling Open access
Alba Morán-Vaquero, Óscar Herranz, Ana Dávila-Hidalgo, Antonio Rodríguez-Blázquez, Cristina Fernández‐Infante, Ignacio García‐Tuñón, +5 more
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Rhizosphere microbiome promotes wheat salt tolerance through root lignin biosynthesis2026 Research Square preprint Agricultural and Biological Sciences Plant-Microbe Interactions and Immunity Open access
Guangzhou Wang, Ni Gang, Shiqian Meng, Jiyu Jia, Dapu Zhou, Т. Martijn Bezemer, +4 more
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