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A comprehensive mouse kidney atlas enables rare cell population characterization and robust marker discovery2023 iScience article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Claudio Novella-Rausell, Magda Grudniewska, Dorien J.M. Peters, Ahmed Essam Mahfouz
38citations -
Genomic profiling defines variable clonal relatedness between invasive breast cancer and primary ductal carcinoma in situ2021 medRxiv preprint Biochemistry, Genetics and Molecular Biology Cancer Genomics and Diagnostics Open access
Esther H. Lips, Tapsi Kumar, Anargyros Megalios, Lindy L. Visser, Michael Sheinman, Angelo Fortunato, +41 more
4citations -
OX40 agonism enhances efficacy of PD-L1 checkpoint blockade by shifting the cytotoxic T cell differentiation spectrum2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Cancer Immunotherapy and Biomarkers Open access
Guillaume Beyrend, Tetje Cornelia van der Sluis, Esmé T.I. van der Gracht, Tamim Abdelaal, Simon P. Jochems, Robert A. Belderbos, +16 more
0citations -
Tissue microenvironment dictates the state of human induced pluripotent stem cell-derived endothelial cells of distinct developmental origin in 3D cardiac microtissues2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Pluripotent Stem Cells Research Open access
Xu Cao, Maria Mircea, Francijna E. van den Hil, Hailiang Mei, Katrin Neumann, Konstantinos Anastassiadis, +3 more
1citations -
Cell-type-specific activation of broadly perceived effector-triggered immunity restricts pathogen invasion in plants2026 Cell Host & Microbe article Agricultural and Biological Sciences Plant-Microbe Interactions and Immunity Open access
Himanshu Chhillar, Leonardo Jo, Volkan Çevik, Amey Redkar, Kaisa Kajala, Jonathan D. G. Jones, +1 more
1citations -
Cell-type-specific execution of effector-triggered immunity2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Plant-Microbe Interactions and Immunity Open access
Himanshu Chhillar, Leonardo Jo, Amey Redkar, Kaisa Kajala, Jonathan D. G. Jones, Pingtao Ding
5citations -
scAGG: Sample-level embedding and classification of Alzheimer's disease from single-nucleus data2025 Computational and Structural Biotechnology Journal article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Timo Verlaan, Gerard A. Bouland, Ahmed Essam Mahfouz, Marcel J. T. Reinders
2citations -
Targeting Modulated Vascular Smooth Muscle Cells in Atherosclerosis via FAP-Directed Immunotherapy2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology Atherosclerosis and Cardiovascular Diseases Open access
Junedh Amrute, In‐Hyuk Jung, Tracy Yamawaki, Andrea L. Bredemeyer, Johanna Diekmann, Sikander Hayat, +28 more
5citations -
Serum proteomics of adults with acute liver failure provides mechanistic insights and attractive prognostic biomarkers2025 JHEP Reports article Pharmacology, Toxicology and Pharmaceutics Drug-Induced Hepatotoxicity and Protection Open access
Katharina Remih, Franziska-Maria Hufnagel, Anna Sophie Karl, Valerie L. Durkalski‐Mauldin, William M. Lee, Constantine Jason Karvellas, +14 more
4citations -
Comprehensive spatial profiling of the spleen in murine and human myelofibrosis identifies targetable immune-stromal interactions2025 Zenodo (CERN European Organization for Nuclear Research) dataset Medicine Myeloproliferative Neoplasms: Diagnosis and Treatment Open access
Bérénice Dugué, Pia Wanner, Mayra L. Ruiz Tejada Segura, Charles Dussiau, Rebekka K. Schneider
0citations -
Comprehensive spatial profiling of the spleen in murine and human myelofibrosis identifies targetable immune-stromal interactions2025 Zenodo (CERN European Organization for Nuclear Research) dataset Medicine Myeloproliferative Neoplasms: Diagnosis and Treatment Open access
Bérénice Dugué, Wanner Pia, Mayra L. Ruiz Tejada Segura, Charles Dussiau, Rebekka K. Schneider
0citations -
OmniPath: integrated knowledgebase for multi-omics analysis2025 Nucleic Acids Research article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Dénes Türei, Jonathan Schaul, Nicolàs Palacio‐Escat, Balázs Bohár, Yunfan Bai, Francesco Ceccarelli, +25 more
23citations -
OmniPath: integrated knowledgebase for multi-omics analysis2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Dénes Türei, Jonathan Schaul, Nicolàs Palacio‐Escat, Balázs Bohár, Yunfan Bai, Francesco Ceccarelli, +25 more
0citations