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Pan-cancer in silico analysis of somatic mutations in G-protein coupled receptors: The effect of evolutionary conservation and natural variance2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Cancer Genomics and Diagnostics Open access
Brandon J. Bongers, Marina Gorostiola González, X. Wang, Herman van Vlijmen, Willem Jespers, Hugo Gutiérrez‐de‐Terán, +4 more
3citations -
Utilizing protein structure graph embeddings to predict the pathogenicity of missense variants2025 NAR Genomics and Bioinformatics article Biochemistry, Genetics and Molecular Biology Genomics and Rare Diseases Open access
Martin Danner, Matthias Begemann, Miriam Elbracht, Ingo Kurth, Jeremias Krause
2citations -
A graph-based approach to variant description extraction from sequences2025 NAR Genomics and Bioinformatics article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Mark Santcroos, Walter A. Kosters, Mihai Lefter, Jeroen F. J. Laros, Jonathan K. Vis
0citations -
Genomic survey sequencing and complete mitochondrial genome of the elkhorn coral crab Domecia acanthophora (Desbonne in Desbonne & Schramm, 1867) (Decapoda: Brachyura: Domeciidae)2023 Journal of Crustacean Biology article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Henrique Bravo, Juan Antonio Baeza, Sancia E. T. van der Meij
4citations -
The Genomes of the Livebearing Fish Species Poeciliopsis retropinna and Poeciliopsis turrubarensis Reflect Their Different Reproductive Strategies2020 Molecular Biology and Evolution article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Henri van Kruistum, Michael W Guernsey, Julie C. Baker, Susan L. Kloet, Martien A. M. Groenen, Bart J. A. Pollux, +1 more
15citations -
Introduction to Galaxy Platform for NGS Variant Calling Pipeline2020 Advancements in Life Sciences (University of the Punjab) article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Rashid Saif, Aniqa Ejaz, Tania Mehmood, Suliman Mohammad Alghanem, Talha Saleem Ahmad
5citations -
Helixer: cross-species gene annotation of large eukaryotic genomes using deep learning2020 Bioinformatics article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access cited by 1 patent
Felix Stiehler, Marvin Steinborn, Daniela Dey, Andreas P.M. Weber, Alisandra K. Denton
179citations -
A taxonomic note on the genus Prevotella: Description of four novel genera and emended description of the genera Hallella and Xylanibacter2022 Systematic and Applied Microbiology article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Thomas C. A. Hitch, Kevin Bisdorf, Afrizal Afrizal, Jörg Overmann, Till Strowig, Thomas Clavel
149citations -
Microbial diversity characterization of seawater in a pilot study using Oxford Nanopore Technologies long-read sequencing2021 BMC Research Notes article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Michael K. Liem, Tonny J. G. Regensburg‐Tuïnk, Christiaan V. Henkel, Hans J. Jansen, Herman P. Spaink
10citations -
Nanopore long-read sequencing for the critically ill facilitates ultrarapid diagnostics and urgent clinical decision making2025 European Journal of Human Genetics article Biochemistry, Genetics and Molecular Biology Genomics and Rare Diseases Open access
Daphne J. Smits, Federico Ferraro, Mark Drost, Herma C. van der Linde, Bianca M. de Graaf, Yolande van Bever, +37 more
9citations -
Optical Genome and Epigenome Mapping of Clear Cell Renal Cell Carcinoma2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Cancer Genomics and Diagnostics Open access
Sapir Margalit, Zuzana Tulpová, Yael Michaeli, Tahir Detinis Zur, Jasline Deek, Sivan Louzoun‐Zada, +10 more
6citations -
Intra-Tumoral Genomic Heterogeneity in Rectal Cancer: Mutational Status Is Dependent on Preoperative Biopsy Depth and Location2021 Cancers article Biochemistry, Genetics and Molecular Biology Cancer Genomics and Diagnostics Open access
Floris A. Vuijk, Carlijn van de Water, Shannon van Vliet, Maxime J.M. van der Valk, Femke Simmer, Cornelis J.�H. van de Velde, +3 more
6citations -
Optical genome and epigenome mapping of clear cell renal cell carcinoma2025 NAR Cancer article Biochemistry, Genetics and Molecular Biology Cancer Genomics and Diagnostics Open access
Sapir Margalit, Zuzana Tulpová, Yael Michaeli, Tahir Detinis Zur, Jasline Deek, Sivan Louzoun Zada, +10 more
4citations -
Microbial diversity characterization of seawater in a pilot study using Oxford Nanopore Technologies long-read sequencing2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Michael K. Liem, A.J.G. Regensburg-Tuïnk, Christiaan V. Henkel, Herman P. Spaink
2citations -
Microbial diversity characterization of seawater in a pilot study using Oxford Nanopore Technologies long-read sequencing2020 Research Square preprint Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Michael K. Liem, A.J.G. Regensburg-Tuïnk, C.V. Henkel, Herman P. Spaink
1citations -
Unique annotations of genes in each chromatin state with Biological Processes2025 dataset Biochemistry, Genetics and Molecular Biology Genomics and Chromatin Dynamics Open access
Eleni Mina, Willeke van Roon‐Mom, Pernette J. Verschure, Peter A.C. ’t Hoen, Mark W. Thompson, Rajaram Kaliyaperumal, +4 more
1citations -
Annotations of CpG containing genes and non CpG containing genes2025 dataset Biochemistry, Genetics and Molecular Biology Genomics and Chromatin Dynamics Open access
Eleni Mina, Willeke van Roon‐Mom, Pernette J. Verschure, Peter A.C. ’t Hoen, Mark Thompson, Rajaram Kaliyaperumal, +4 more
1citations -
Microbial diversity characterization of seawater in a pilot study using Oxford Nanopore Technologies long-read sequencing2020 Research Square preprint Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Michael K. Liem, Tonny J. G. Regensburg‐Tuïnk, Christiaan V. Henkel, Hans J. Jansen, Herman P. Spaink
1citations -
Intra-tumoral genomic heterogeneity in rectal cancer: mutational status is dependent on preoperative biopsy depth and location.2020 Research Square preprint Biochemistry, Genetics and Molecular Biology Cancer Genomics and Diagnostics Open access
Floris A. Vuijk, Carlijn van de Water, Shannon van Lent - van Vliet, Maxime J.M. van der Valk, Femke Simmer, Cornelis J.�H. van de Velde, +3 more
0citations -
Novel diagnostic DNA methylation episignatures expand and refine the epigenetic landscapes of Mendelian disorders2021 Human Genetics and Genomics Advances article Biochemistry, Genetics and Molecular Biology Epigenetics and DNA Methylation Open access
Michael A. Levy, Haley McConkey, Jennifer Kerkhof, Mouna Barat‐Houari, Sara Bargiacchi, Elisa Biamino, +80 more
155citations