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QUAS-R: Glutamine (Q) Uptake Assay with Single cell Resolution reveals metabolic heterogeneity with immune populations2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Amino Acid Enzymes and Metabolism Open access
Leonard R. Pelgrom, Simon O’Shoughnessy, Sander van Kasteren, David K. Finlay, Linda V. Sinclair
5citations -
Human and murine fibroblast single-cell transcriptomics reveals fibroblast clusters are differentially affected by ageing and serum cholesterol2023 Cardiovascular Research article Immunology and Microbiology Atherosclerosis and Cardiovascular Diseases Open access
Kim van Kuijk, Ian R McCracken, Renée J. H. A. Tillie, S. Asselberghs, Dlzar Ali Kheder, Stan Muitjens, +22 more
48citations -
Local and systemic immune profiles of human pancreatic ductal adenocarcinoma revealed by single-cell mass cytometry2022 Journal for ImmunoTherapy of Cancer article Medicine Pancreatic and Hepatic Oncology Research Open access
Thomas P. Brouwer, Natasja L. De Vries, Tamim Abdelaal, Ricki T. Krog, Zheng Li, Dina Ruano, +7 more
26citations -
CACTUS: integrating clonal architecture with genomic clustering and transcriptome profiling of single tumor cells2021 Genome Medicine article Biochemistry, Genetics and Molecular Biology Cancer Genomics and Diagnostics Open access
Shadi Darvish Shafighi, Szymon M. Kiełbasa, Julieta Sepúlveda-Yáñez, Ramin Monajemi, Davy Cats, Hailiang Mei, +5 more
10citations -
CACTUS: integrating clonal architecture with genomic clustering and transcriptome profiling of single tumor cells2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Shadi Darvish Shafighi, Szymon M. Kiełbasa, Julieta Sepúlveda-Yáñez, Ramin Monajemi, Davy Cats, Hailiang Mei, +5 more
4citations -
Random forest and live single‐cell metabolomics reveal metabolic profiles of human macrophages upon polarization2023 Biotechnology and Bioengineering article Biochemistry, Genetics and Molecular Biology Metabolomics and Mass Spectrometry Studies Open access
Huaqi Tang, Ahmed Ali, Eman Muhammad Abdelazem, Tom H. M. Ottenhoff, Ron M. A. Heeren, Alireza Mashaghi
13citations -
Metabolic profiling of material-limited cell samples by dimethylaminophenacyl bromide derivatization with UPLC-MS/MS analysis2020 Microchemical Journal article Biochemistry, Genetics and Molecular Biology Metabolomics and Mass Spectrometry Studies Open access
Cornelius C.W. Willacey, Naama Karu, Amy C. Harms, Thomas Hankemeier
13citations -
An Integrated Gene Expression Landscape Profiling Approach to Identify Lung Tumor Endothelial Cell Heterogeneity and Angiogenic Candidates2020 Cancer Cell article Biochemistry, Genetics and Molecular Biology Angiogenesis and VEGF in Cancer Open access
Jermaine Goveia, Kateřina Rohlenová, Federico Taverna, Lucas Treps, Lena‐Christin Conradi, Andreas Pircher, +43 more
492citations -
Functional and spatial proteomics profiling reveals intra- and intercellular signaling crosstalk in colorectal cancer2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Colorectal Cancer Treatments and Studies Open access
Christina Plattner, Giorgia Lamberti, Peter Blattmann, Alexander Kirchmair, Dietmar Rieder, Zuzana Loncová, +23 more
0citations -
The mOTUs online database provides web-accessible genomic context to taxonomic profiling of microbial communities2024 Nucleic Acids Research article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Marija Dmitrijeva, Hans‐Joachim Ruscheweyh, Lilith Feer, Samuel Miravet‐Verde, Anna Sintsova, Daniel R. Mende, +2 more
39citations -
Resolving the immune response across clonal cancer evolution in situ with Atera whole transcriptome profiling2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Shaocheng Wu, Mohita Mahajan, Maarten van der Linde, Chunfang Zhu, Robert B. West, David G.P. van IJzendoorn, +1 more
1citations -
Human Neocortical Glutamatergic Neurons Revealed Through Multimodal Profiling2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Rachel A. Dalley, Sarah Walling-Bell, Jeremy A. Miller, Femke Waleboer, Julian Thijssen, Audrey McCutcheon, +92 more
3citations -
A guide to the BRAIN Initiative Cell Census Network data ecosystem2023 PLoS Biology article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Michael Hawrylycz, Maryann Elizabeth Martone, Giorgio A. Ascoli, Jan Gunnar Bjaalie, Hong‐Wei Dong, Satrajit Ghosh, +92 more
53citations -
A comprehensive mouse kidney atlas enables rare cell population characterization and robust marker discovery2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Claudio Novella-Rausell, Magda Grudniewska, Dorien J.M. Peters, Ahmed Essam Mahfouz
5citations