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Targeting chitinase-3-like protein-1 in pancolitis by a drug-repurposing approach2026 Biochemical Pharmacology article Biochemistry, Genetics and Molecular Biology Inflammatory Bowel Disease Open access
Faranak Bahramimehr, Stefanie Kurz, Axel Guthart, Susanne M. Krug, Anja Fromm, Mohamed Elbadawi, +10 more
0citations -
Ligand Pose Predictions for Human G Protein-Coupled Receptors: Insights from the Amber-Based Hybrid Molecular Mechanics/Coarse-Grained Approach2020 Journal of Chemical Information and Modeling article Computer Science Computational Drug Discovery Methods
Ksenia Korshunova, Zeineb Si Chaib, Alejandro Giorgetti, Mercedes Alfonso‐Prieto, Paolo Carloni
16citations -
Lack of detectable neoantigen depletion in treatment-naïve cancers2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Cancer Immunotherapy and Biomarkers Open access
Maarten Slagter, Lorenzo F. Fanchi, Marit M. van Buuren, Arno Velds, Gergana Bounova, Lodewyk F.A. Wessels, +1 more
0citations -
RGT: a toolbox for the integrative analysis of high throughput regulatory genomics data2023 BMC Bioinformatics article Biochemistry, Genetics and Molecular Biology Genomics and Chromatin Dynamics Open access
Zhijian Li, Chao‐Chung Kuo, Fabio Ticconi, Mina Shaigan, Julia Gehrmann, Eduardo Gade Gusmao, +4 more
24citations -
plantiSMASH 2.0: Improvements to Detection, Annotation, and Prioritization of Plant Biosynthetic Gene Clusters2026 Journal of Molecular Biology article Medicine Microbial Natural Products and Biosynthesis Open access
Elena Del Pup, Charlotte Owen, Hannah E. Augustijn, Arjan Draisma, Guy Polturak, Satria Ardhe Kautsar, +3 more
12citations -
gutSMASH 2.0: Extended Identification of Primary Metabolic Gene Clusters From the Human Gut Microbiota2025 Journal of Molecular Biology article Medicine Microbial Natural Products and Biosynthesis Open access
Yijun Zhu, Hannah E. Augustijn, Victòria Andreu, Arjan Draisma, Gilles P. van Wezel, Dylan Dodd, +2 more
3citations -
RGT: a toolbox for the integrative analysis of high throughput regulatory genomics data2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genomics and Chromatin Dynamics Open access
Zhijian Li, Chao‐Chung Kuo, Fabio Ticconi, Mina Shaigan, Eduardo Gade Gusmao, Manuel Allhoff, +3 more
2citations -
Physics-based generative model of curvature sensing peptides; distinguishing sensors from binders2023 Science Advances article Biochemistry, Genetics and Molecular Biology Lipid Membrane Structure and Behavior Open access
Niek van Hilten, Jeroen Methorst, Nino Verwei, Herre Jelger Risselada
49citations -
Combining Bayesian and Evidential Uncertainty Quantification for Improved Bioactivity Modeling2025 Journal of Chemical Information and Modeling article Computer Science Computational Drug Discovery Methods Open access
Kajetan Schweighofer, Natalia Dyubankova, Gerard J. P. van Westen, Herman van Vlijmen
8citations -
T cell-mediated protection against lethal SARS-CoV-2 challenge by a synthetic long peptide vaccine targeting conserved CD4+ and CD8+ T cell epitopes
Esmé T.I. van der Gracht, Iris N. Pardieck, Suzanne van Duikeren, Peter van Rijn, Dominique M. B. Veerkamp, J. Fréderique de Graaf, +13 more
0citations -
Predictions of the Poses and Affinity of a Ligand over the Entire Surface of a NEET Protein: The Case of Human MitoNEET2023 Journal of Chemical Information and Modeling article Computer Science Computational Drug Discovery Methods Open access
Ke Zuo, Riccardo Capelli, Giulia Rossetti, Rachel Nechushtai, Paolo Carloni
8citations -
Annotation of Allosteric Compounds to Enhance Bioactivity Modeling for Class A GPCRs2020 Journal of Chemical Information and Modeling article Computer Science Computational Drug Discovery Methods Open access
Lindsey Burggraaff, Amber van Veen, Chi Chung Lam, Herman van Vlijmen, Adriaan P. IJzerman, Gerard J. P. van Westen
10citations -
Decoding exon inclusion in the human brain reveals more divergent splicing mechanisms in neurons than glia2026 Figshare other Biochemistry, Genetics and Molecular Biology RNA Research and Splicing Open access
Lieke Michielsen, Justine Hsu, Anoushka Joglekar, Natan Belchikov, Marcel J. T. Reinders, Hagen Tilgner, +1 more
0citations -
Decoding exon inclusion in the human brain reveals more divergent splicing mechanisms in neurons than glia2026 Figshare other Biochemistry, Genetics and Molecular Biology RNA Research and Splicing Open access
Lieke Michielsen, Justine Hsu, Anoushka Joglekar, Natan Belchikov, Marcel J. T. Reinders, Hagen Tilgner, +1 more
0citations