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Multi-Compartment Impact of Micropollutants and Particularly Antibiotics on Bacterial Communities Using Environmental DNA at River Basin-Level2024 SSRN Electronic Journal preprint Environmental Science Pharmaceutical and Antibiotic Environmental Impacts Open access
Pedro A. Inostroza, Gerdhard L Jessen, Feilong Li, Xiaowei Zhang, Werner Brack, Thomas Backhaus
0citations -
Genotyping by sequencing for estimating relative abundances of diatom taxa in mock communities2023 BMC Ecology and Evolution article Environmental Science Environmental DNA in Biodiversity Studies Open access
Ozan Çiftçi, Cornelis A. M. Wagemaker, Adrienne Mertens, Peter M. van Bodegom, Walter Pirovano, Barbara Gravendeel
2citations -
Competition between homologous chromosomal DNA and exogenous donor DNA to repair CRISPR/Cas9-induced double-strand breaks in Aspergillus niger2024 Fungal Biology and Biotechnology article Biochemistry, Genetics and Molecular Biology CRISPR and Genetic Engineering Open access
Selina Forrer, Mark Arentshorst, Prajeesh Kooloth-Valappil, Jaap Visser, Arthur F. J. Ram
0citations -
Profiling (placental) DNA methylation in cell-free DNA across gestation: the Rotterdam Periconception Cohort2025 Molecular Human Reproduction article Biochemistry, Genetics and Molecular Biology Epigenetics and DNA Methylation Open access
Marjolein M. van Vliet, Ruben Boers, Joachim Boers, Olivier J. M. Schäffers, Lotte E. van der Meeren, Joost H. Gribnau, +2 more
7citations -
Genotyping by Sequencing for Estimating Relative Abundances of Diatom Taxa in Mock Communities2022 Research Square preprint Environmental Science Environmental DNA in Biodiversity Studies Open access
Ozan Çiftçi, Cornelis A. M. Wagemaker, Adrienne Mertens, Peter M. van Bodegom, Walter Pirovano, Barbara Gravendeel
0citations -
Genomic survey sequencing and complete mitochondrial genome of the elkhorn coral crab Domecia acanthophora (Desbonne in Desbonne & Schramm, 1867) (Decapoda: Brachyura: Domeciidae)2023 Journal of Crustacean Biology article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Henrique Bravo, Juan Antonio Baeza, Sancia E. T. van der Meij
4citations -
A stepwise short- and long-read whole genome sequencing strategy resolves previous genetically unresolved inherited retinal disease cases2026 medRxiv preprint Biochemistry, Genetics and Molecular Biology Genomics and Rare Diseases Open access
Kim Rodenburg, Stefanida Shliaga, Lonneke Haer‐Wigman, Anneke T. Vulto‐van Silfhout, Erica G. M. Boonen, Lara K. Holtes, +24 more
0citations -
Evaluation of the feasibility, diagnostic yield, and clinical utility of rapid genome sequencing in infantile epilepsy (Gene-STEPS): an international, multicentre, pilot cohort study
Alissa M. D’Gama, Sarah Mulhern, Beth Rosen Sheidley, Fadil Boodhoo, Sarah Buts, Natalie Jane Chandler, +32 more
81citations -
Development of an amplicon nanopore sequencing strategy for detection of mutations conferring intermediate resistance to vancomycin in Staphylococcus aureus strains2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Antimicrobial Resistance in Staphylococcus Open access
Abraham G Moller, Robert A. Petit, Michelle H. Davis, Timothy D. Read
0citations -
Adaptation of DNA to Protein Binding Revealed by Spectroscopy and Molecular Simulation2025 The Journal of Physical Chemistry B article Biochemistry, Genetics and Molecular Biology DNA and Nucleic Acid Chemistry Open access
Thor van Heesch, Sudhanshu Sharma, Bert van Erp, Alberto Pérez de Alba Ortíz, Remus Thei Dame, Jocelyne Vreede, +1 more
2citations -
Rapid and reliable species-level identification from clinical samples using 16S rRNA gene nanopore sequencing analysis2025 Scientific Reports article Biochemistry, Genetics and Molecular Biology Bacterial Identification and Susceptibility Testing Open access
Marco J. R. Ivens, Sergio Kamminga, Kawtar Benchamach, Chaimae Akile, Els Wessels, Eric C. J. Claas, +1 more
9citations -
Reference Genomes used in a Shotgun Sequencing Benchmark Study2026 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Nicole Simone Treichel, Charlie Pauvert, Joana Séneca, Petra Pjevac, David Berry, John Penders, +2 more
0citations -
Metagenome-Assembled Genomes Generated in a Shotgun Sequencing Benchmark Study2026 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Nicole Simone Treichel, Charlie Pauvert, Joana Séneca, Petra Pjevac, David Berry, John Penders, +2 more
0citations -
The interplay of DNA repair context with target sequence predictably biases Cas9-generated mutations2024 Nature Communications article Biochemistry, Genetics and Molecular Biology CRISPR and Genetic Engineering Open access
Ananth Pallaseni, Elin Madli Peets, Gareth Girling, Ivan Kuzmin, Marilin Moor, Núria Muñoz-Subirana, +7 more
18citations -
Precise Mechanochemical Scission of DNA Guided by Secondary Structures2026 Journal of the American Chemical Society article Biochemistry, Genetics and Molecular Biology DNA and Nucleic Acid Chemistry Open access
Johannes Hahmann, Boris N. Schüpp, Montgomery Labudda, Yuanxu Zhou, Gurudas Chakraborty, Frauke Gräter
0citations -
Bacterial histone HBb from Bdellovibrio bacteriovorus compacts DNA by bending2024 Nucleic Acids Research article Biochemistry, Genetics and Molecular Biology Genomics and Chromatin Dynamics Open access cited by 1 patent
Yimin Hu, Samuel Schwab, Silvia Deiss, Pedro Escudeiro, Thor van Heesch, Joe D. Joiner, +6 more
23citations -
A taxonomically reliable DNA barcode reference library for North Sea macrobenthos2025 Scientific Data data-paper Environmental Science Environmental DNA in Biodiversity Studies Open access
Magdalini Christodoulou, Sofie Derycke, Kevin K. Beentjes, Hans Hillewaert, Silke Laakmann, Kennet Lundin, +9 more
9citations