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Structural analyses and substrate profiling of PPEP-3 provide new insights into the molecular basis of Pro-Pro endopeptidase specificity2025 iScience article Biochemistry, Genetics and Molecular Biology Protease and Inhibitor Mechanisms Open access
Bart Claushuis, Fabian Wojtalla, Lisa Papenhagen, Robert A. Cordfunke, Arnoud H. de Ru, Hans C. van Leeuwen, +3 more
0citations -
Switching the Mode of Drug Release from a Reaction-Coupled Low-Molecular-Weight Gelator System by Altering Its Reaction Pathway2022 Biomacromolecules article Materials Science Supramolecular Self-Assembly in Materials Open access
Willem E. M. Noteborn, Sandeepa Kulala Vittala, Maria Broto Torredemer, Chandan Maity, Frank Versluis, Rienk Eelkema, +1 more
17citations -
Molecular Basis of CLC Antiporter Inhibition by Fluoride2020 Journal of the American Chemical Society article Biochemistry, Genetics and Molecular Biology Ion channel regulation and function Open access
Maria Gabriella Chiariello, Viacheslav Bolnykh, Emiliano Ippoliti, Simone Meloni, Jógvan Magnus Haugaard Olsen, Thomas L. Beck, +3 more
37citations -
Interaction of bioactive kaempferol with HMGB1: Investigation by multi-spectroscopic and molecular simulation methods2023 Spectrochimica Acta Part A Molecular and Biomolecular Spectroscopy article Biochemistry, Genetics and Molecular Biology Protein Interaction Studies and Fluorescence Analysis
Pingping Shen, Yueming Sun, Xuewa Jiang, Xiaoyang Zhou, Binbin Nian, Weiwei Wang, +1 more
6citations -
YB-1 Interferes with TNFα–TNFR Binding and Modulates Progranulin-Mediated Inhibition of TNFα Signaling2020 International Journal of Molecular Sciences article Medicine Cytokine Signaling Pathways and Interactions Open access
Christopher L. Hessman, Josephine Hildebrandt, Aneri Shah, Sabine Brandt, Antonia Bock, Björn C. Frye, +6 more
22citations -
LogoMotif: A Comprehensive Database of Transcription Factor Binding Site Profiles in Actinobacteria2024 Journal of Molecular Biology article Biochemistry, Genetics and Molecular Biology Bacterial Genetics and Biotechnology Open access
Hannah E. Augustijn, Dimitris Karapliafis, K. Joosten, Sébastien Rigali, Gilles P. van Wezel, Marnix H. Medema
20citations -
How Does Surface Charge Engineering of Bacillus subtilis Lipase A Improve Ionic Liquid Resistance? Lessons Learned from Molecular Dynamics Simulations2022 ACS Sustainable Chemistry & Engineering article Biochemistry, Genetics and Molecular Biology Enzyme Catalysis and Immobilization
Subrata Pramanik, Haiyang Cui, Gaurao V. Dhoke, Can Bora Yildiz, Markus Vedder, Karl‐Erich Jaeger, +2 more
31citations -
Controlled Diffusion of Photoswitchable Receptors by Binding Anti-electrostatic Hydrogen-Bonded Phosphate Oligomers2020 Journal of the American Chemical Society article Materials Science Photochromic and Fluorescence Chemistry Open access
Thomas S. C. MacDonald, Ben L. Feringa, William S. Price, Sander J. Wezenberg, Jonathon E. Beves
50citations -
Navigating the complexities of docking tools with nicotinic receptors and acetylcholine binding proteins in the realm of neonicotinoids2024 Ecotoxicology and Environmental Safety article Computer Science Computational Drug Discovery Methods Open access
Zakaria Bouchouireb, Damien Olivier‐Jimenez, Titouan Jaunet‐Lahary, Steeve Hervé Thany, Jean‐Yves Le Questel
14citations -
Enhanced Sampling Approach to the Induced-Fit Docking Problem in Protein–Ligand Binding: The Case of Mono-ADP-Ribosylation Hydrolase Inhibitors2021 Journal of Chemical Theory and Computation article Computer Science Computational Drug Discovery Methods Open access
Qianqian Zhao, Riccardo Capelli, Paolo Carloni, Bernhard Lüscher, Jinyu Li, Giulia Rossetti
28citations -
Molecular Modeling of Protein–Peptide Complexes Mimicking Factor Xa–Prothrombin Using AlphaFold-Multimer and Molecular Dynamics Simulations for Functional Prediction2026 Journal of Chemical Information and Modeling article Medicine Blood Coagulation and Thrombosis Mechanisms
Dejvid Veizaj, David Alonzo Poole III, Ka Lei Cheung, Jos V. Flier, Pieter H. Reitsma, Daniël Verhoef, +2 more
1citations -
The molecular basis and enzyme engineering strategies for improvement of coupling efficiency in cytochrome P450s2022 Biotechnology Advances article Biochemistry, Genetics and Molecular Biology Enzyme Catalysis and Immobilization
Shuaiqi Meng, Yu Ji, Leilei Zhu, Gaurao V. Dhoke, Mehdi D. Davari, Ulrich Schwaneberg
49citations -
Cold-Inducible RNA-Binding Protein but Not Its Antisense lncRNA Is a Direct Negative Regulator of Angiogenesis In Vitro and In Vivo via Regulation of the 14q32 angiomiRs—microRNA-329-3p and microRNA-495-3p2021 International Journal of Molecular Sciences article Biochemistry, Genetics and Molecular Biology MicroRNA in disease regulation Open access
Eveline A. C. Goossens, Licheng Zhang, Margreet R. de Vries, J. Wouter Jukema, Paul H.A. Quax, Anne Yaël Nossent
10citations -
A conserved peptide-binding pocket in HyNaC/ASIC ion channels2024 Proceedings of the National Academy of Sciences article Biochemistry, Genetics and Molecular Biology Ion channel regulation and function Open access
Audrey Ortega-Ramírez, Simone Albani, Michèle Bachmann, Axel Schmidt, Manuela Pinoé-Schmidt, Marc Assmann, +3 more
7citations -
Chemical synthesis of linear ADP-ribose oligomers up to pentamer and their binding to the oncogenic helicase ALC12021 Chemical Science article Medicine PARP inhibition in cancer therapy Open access cited by 1 patent
Qiang Liu, Gunnar Knobloch, Jim Voorneveld, Nico J. Meeuwenoord, Herman S. Overkleeft, Gijsbert A. van der Marel, +2 more
10citations